CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90296	Canola	nucleus	65.43	72.7
CDX91465	Canola	nucleus	18.86	35.68
CDX91450	Canola	nucleus	19.43	32.69
CDX91454	Canola	nucleus	19.71	30.67
CDX91458	Canola	nucleus	19.43	30.09
CDY54454	Canola	nucleus	20.0	29.79
CDY09605	Canola	mitochondrion, plastid	16.86	28.78
CDY26273	Canola	nucleus	17.71	28.7
CDX90410	Canola	nucleus	16.0	26.29
CDX91456	Canola	mitochondrion	10.57	26.06
OQU82679	Sorghum	nucleus	12.0	25.15
CDY70171	Canola	cytosol, nucleus, plastid	17.43	24.9
AT1G73490.2	Thale cress	nucleus	17.71	23.85
CDY09156	Canola	cytosol	19.43	21.94
Bra010724.1-P	Field mustard	nucleus	42.0	17.05
CDX92253	Canola	nucleus	13.43	16.67
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.43	13.29
CDY60074	Canola	nucleus	15.43	12.27
CDY65178	Canola	nucleus	15.71	11.41
CDX77274	Canola	nucleus	18.0	10.88
CDY59893	Canola	nucleus	14.86	10.18
CDY20455	Canola	nucleus	8.29	9.6
CDX93706	Canola	nucleus	13.71	9.58
CDX92252	Canola	nucleus	16.0	9.32
CDX99340	Canola	nucleus	15.43	8.64
CDY16474	Canola	nucleus	11.71	8.47
CDX99339	Canola	nucleus	13.43	8.02
CDX93704	Canola	nucleus	14.86	7.62
CDX91457	Canola	mitochondrion	1.14	7.55
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	8.0	5.43

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078FCL2	UniProt:A0A078FCL2	EnsemblPlants:CDY12105	ProteinID:CDY12105
ProteinID:CDY12105.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00061077001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43987	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDC3E3

Description

BnaC03g60210DBnaC03g60210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCL2]

Coordinates

chrLK032017:+:531639..533950

Molecular Weight (calculated)

39890.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.440

Length

350 amino acids

Sequence
(BLAST)

001: MASPLLVNDC WAAALHRAYS ALLTLSGSPG RVLTRQGIID GVDEAYQASG DGIDRLKYAI SFMEKYVKEM NIYRRPRGND ASSYEDFESF TLQLLATTPV
101: MVTVECLPSF QSFDGQVATT TEPSEINSDD PEALVKPQKP KRLKKIVDEL SNRLDEMTEI VKKLKKNSDL LEEENNNTPK EKVVDHECYF ESEDADFKNR
201: RTIFVLGFDC SFPRDEIKRT LIKHFSSCGE VSRVYIPFHC DTGSPMGFAF ISMGNPDKAL TLNGSYLDGM RLEVTMATKR SEYYGYTNHR GCQRCGIASA
301: KRLAKRFYDR TRIRIPLGTS FFSFIFESLK ENNSYICDYF YRLHSVPSDF

Best Arabidopsis Sequence Match ( AT1G73490.1 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.