CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93706	Canola	nucleus	72.21	73.65
CDY60074	Canola	nucleus	59.3	68.86
CDY65178	Canola	nucleus	61.45	65.15
AT1G48920.1	Thale cress	nucleus	58.32	53.5
CDX77274	Canola	nucleus	57.93	51.12
CDX93704	Canola	nucleus	65.56	49.12
CDY16474	Canola	nucleus	43.84	46.28
GSMUA_Achr10P...	Banana	nucleus	24.46	42.96
GSMUA_Achr11P...	Banana	nucleus	25.05	42.24
CDX92253	Canola	nucleus	22.11	40.07
TraesCS7B01G183600.1	Wheat	nucleus	38.75	35.11
Os08t0192900-01	Rice	nucleus	39.14	34.97
PGSC0003DMT400003013	Potato	nucleus	42.47	34.66
TraesCS7D01G289200.1	Wheat	nucleus	38.16	34.09
HORVU7Hr1G068630.2	Barley	nucleus	38.16	34.09
CDX99340	Canola	nucleus	41.49	33.92
CDX92252	Canola	nucleus	39.33	33.44
Solyc02g014310.2.1	Tomato	nucleus	40.12	32.49
EER94106	Sorghum	nucleus	40.7	31.33
TraesCS7A01G286200.1	Wheat	nucleus	36.99	31.09
Os04t0620700-01	Rice	nucleus	42.47	30.69
EES14672	Sorghum	nucleus	38.36	30.29
CDY20455	Canola	nucleus	17.22	29.14
TraesCS2D01G465200.1	Wheat	nucleus	40.51	28.32
TraesCS2B01G486000.4	Wheat	nucleus	40.12	28.12
Zm00001d049399_P001	Maize	plasma membrane	37.96	27.71
CDX91465	Canola	nucleus	9.98	27.57
Zm00001d032748_P001	Maize	nucleus	41.1	27.34
TraesCS2A01G464300.3	Wheat	nucleus	39.14	27.32
CDX91456	Canola	mitochondrion	7.24	26.06
CDX91450	Canola	nucleus	9.98	24.52
CDX91454	Canola	nucleus	10.57	24.0
CDX99339	Canola	nucleus	27.2	23.72
CDX91458	Canola	nucleus	10.37	23.45
CDX91457	Canola	mitochondrion	2.35	22.64
CDY54454	Canola	nucleus	10.18	22.13
CDY09605	Canola	mitochondrion, plastid	8.41	20.98
CDY26273	Canola	nucleus	8.61	20.37
CDY70171	Canola	cytosol, nucleus, plastid	9.39	19.59
CDX90410	Canola	nucleus	8.02	19.25
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	17.42	17.25
CDX90296	Canola	nucleus	10.18	16.51
CDY09156	Canola	cytosol	9.98	16.45
CDY12105	Canola	plastid	10.18	14.86

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:A0A078J890	UniProt:A0A078J890	EnsemblPlants:CDY59893	ProteinID:CDY59893
ProteinID:CDY59893.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00027871001	InterPro:IPR000504	InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EC7620
SEG:seg	:	:	:	:	:

Description

BnaC06g40890DBnaC06g40890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J890]

Coordinates

chrLK033818:+:40607..43679

Molecular Weight (calculated)

54748.0 Da

IEP (calculated)

4.842

GRAVY (calculated)

-1.145

Length

511 amino acids

Sequence
(BLAST)

001: MGKKSATKVE AAPAAIKATK PLKKGKREPE DDLETKVNLK KQKKDLVAAV QKEKAEKKVP KKVESSDESD SSDSEEEDKA KKVPAKKAPV EAASSSDDDA
101: DDSSSDDEPA QKKAVASTNG IVAKKAKDES SSEEESSDEE EVAATKKPAA AAKPAAKDSS SSEEDSEDES EDEKVKPLAK KAAPVATKAA SSSSDSSEED
201: SDEESEDEKT APKAKEGTKT AEKDSSSDDS GSEESESEDE KETPKKKSSD VEMVDAEKHQ PKTPSTPAAG GTKTLFVANL PFQVERSDVE EFFKEAGQVV
301: DVRFATNKDD GRFRGFGHVE FASAGEAQKA LEFHGRPLLG RELRLDVAQE RGERPAYTPQ SGTGNNFRSG GGGGEEVFVK GFDSSLPPND IKSALREHFA
401: SCGEITRVSV PIDRETGGSR GIAYVEFKEG TKKAFELNGS DMGGWNIVVD QPRQKENNNS GGGFNGGRSG GRDNFRGRGR GRDNFRGRGR DNGRGRPSFT
501: SQAKKTVFSD E

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.