CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91454	Canola	nucleus	87.5	80.89
CDX91465	Canola	nucleus	59.13	66.49
CDX91458	Canola	nucleus	64.9	59.73
CDY54454	Canola	nucleus	62.02	54.89
CDX91456	Canola	mitochondrion	28.37	41.55
CDY09605	Canola	mitochondrion, plastid	28.85	29.27
CDY26273	Canola	nucleus	28.85	27.78
CDX90410	Canola	nucleus	26.44	25.82
OQU82679	Sorghum	nucleus	20.67	25.75
CDY70171	Canola	cytosol, nucleus, plastid	29.33	24.9
CDX90296	Canola	nucleus	32.69	21.59
CDY09156	Canola	cytosol	31.73	21.29
CDY12105	Canola	plastid	32.69	19.43
CDX91457	Canola	mitochondrion	4.33	16.98
CDX92253	Canola	nucleus	21.15	15.6
CDY60074	Canola	nucleus	25.48	12.05
CDY65178	Canola	nucleus	24.52	10.58
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	14.9	10.3
CDY59893	Canola	nucleus	24.52	9.98
CDX93706	Canola	nucleus	23.56	9.78
CDX77274	Canola	nucleus	25.48	9.15
CDY20455	Canola	nucleus	12.98	8.94
CDY16474	Canola	nucleus	19.71	8.47
CDX92252	Canola	nucleus	23.56	8.15
CDX93704	Canola	nucleus	24.52	7.48
CDX99339	Canola	nucleus	20.67	7.34
CDX99340	Canola	nucleus	21.63	7.2
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	9.62	3.88

Protein Annotations

EnsemblPlants:CDX91450	EnsemblPlantsGene:GSBRNA2T00152778001	Gene3D:3.30.70.330	GO:A0A078DQ16	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43987	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX91450	ProteinID:CDX91450.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE900C	MapMan:35.1	:	:

Description

BnaC04g07000D

Coordinates

chrLK031867:+:1064877..1065822

Molecular Weight (calculated)

23795.1 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.956

Length

208 amino acids

Sequence
(BLAST)

001: MRPSTLGTSN GTHKRELDDS ETEVNSRKKQ KQEEETTEKK KECCFDTKDA KGNNERTIFV TGFDNSGSRD EIRSALAKHF SSCGELTRVF VHIECETGVS
101: RGYAFINLKN RVGIEAALTL NGSDLGGRKL LVTMARLRDE YYGHFNFKGC EICRASYAAG RLRLYRWNLR TGGGKFRRFS PEFEEKCRRH HEETMASRKM
201: NKSKTKEG

Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.