CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91465	Canola	nucleus	69.47	84.86
CDY54454	Canola	nucleus	73.01	70.21
CDX91454	Canola	nucleus	67.7	68.0
CDX91450	Canola	nucleus	59.73	64.9
CDX91456	Canola	mitochondrion	32.74	52.11
CDY09605	Canola	mitochondrion, plastid	27.43	30.24
CDY26273	Canola	nucleus	27.43	28.7
CDX90410	Canola	nucleus	26.99	28.64
OQU82679	Sorghum	nucleus	19.03	25.75
CDY70171	Canola	cytosol, nucleus, plastid	27.88	25.71
CDY09156	Canola	cytosol	30.97	22.58
CDX90296	Canola	nucleus	29.65	21.27
CDY12105	Canola	plastid	30.09	19.43
CDX91457	Canola	mitochondrion	4.42	18.87
CDX92253	Canola	nucleus	22.57	18.09
CDY60074	Canola	nucleus	25.22	12.95
CDY65178	Canola	nucleus	24.78	11.62
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	14.6	10.96
CDX93706	Canola	nucleus	23.01	10.38
CDY59893	Canola	nucleus	23.45	10.37
CDX77274	Canola	nucleus	25.66	10.02
CDY20455	Canola	nucleus	13.27	9.93
CDX92252	Canola	nucleus	26.11	9.82
CDY16474	Canola	nucleus	19.91	9.3
CDX99340	Canola	nucleus	25.22	9.12
CDX93704	Canola	nucleus	23.89	7.92
CDX99339	Canola	nucleus	20.35	7.85
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	10.18	4.46

Protein Annotations

EnsemblPlants:CDX91458	EnsemblPlantsGene:GSBRNA2T00152791001	Gene3D:3.30.70.330	GO:A0A078DW57	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43987	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX91458	ProteinID:CDX91458.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEEF3B	MapMan:35.2	:	:

Description

BnaC04g06920D

Coordinates

chrLK031867:+:1128337..1129581

Molecular Weight (calculated)

25287.9 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.773

Length

226 amino acids

Sequence
(BLAST)

001: MDESKLKRCS TSSTHAEAVD EATDPLQKAD KRELDDSETE VNSRKKQKQE EETTEKKKKC CFGTKDAEGN NEHTIFVTGF DNSGSRDEIR SALAKHFSSC
101: GELTRVFVHI ECETGVSRGY AFINLKKRGG EIEAALSLNG SDLGGHKLLV TMARLRDEYY GHFNFKGCEI CFAMFAAASR RLTRWKLRTG GGKVAILSPE
201: FQEKARLHYK KAMASRKMAK SKSNEG

Best Arabidopsis Sequence Match ( AT1G73490.1 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.