CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09605	Canola	mitochondrion, plastid	72.24	86.34
Bra032377.1-P	Field mustard	nucleus, plastid	51.43	80.25
CDY26273	Canola	nucleus	70.2	79.63
CDX90410	Canola	nucleus	36.73	42.25
CDX91465	Canola	nucleus	24.9	32.97
CDX91450	Canola	nucleus	24.9	29.33
CDX91458	Canola	nucleus	25.71	27.88
CDX91454	Canola	nucleus	25.31	27.56
CDY09156	Canola	cytosol	33.47	26.45
CDY54454	Canola	nucleus	24.9	25.96
CDX91456	Canola	mitochondrion	13.47	23.24
OQU82679	Sorghum	nucleus	14.29	20.96
CDX90296	Canola	nucleus	24.9	19.37
CDY12105	Canola	plastid	24.9	17.43
CDX92253	Canola	nucleus	16.33	14.18
CDY60074	Canola	nucleus	19.18	10.68
CDY65178	Canola	nucleus	20.41	10.37
CDY59893	Canola	nucleus	19.59	9.39
CDX93706	Canola	nucleus	18.78	9.18
CDX77274	Canola	nucleus	21.22	8.98
CDY20455	Canola	nucleus	10.61	8.61
CDY16474	Canola	nucleus	15.51	7.85
CDX91457	Canola	mitochondrion	1.63	7.55
CDX93704	Canola	nucleus	20.82	7.48
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	8.98	7.31
CDX92252	Canola	nucleus	17.55	7.15
CDX99340	Canola	nucleus	16.73	6.56
CDX99339	Canola	nucleus	15.1	6.31
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	8.57	4.07

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078JXD5	UniProt:A0A078JXD5	EnsemblPlants:CDY70171	ProteinID:CDY70171
ProteinID:CDY70171.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00096849001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEF059	SEG:seg

Description

BnaCnng67040DBnaCnng67040D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXD5]

Coordinates

chrLK041368:+:1115..2472

Molecular Weight (calculated)

27680.5 Da

IEP (calculated)

9.721

GRAVY (calculated)

-0.620

Length

245 amino acids

Sequence
(BLAST)

001: ANPTTLHKTL PRNVFFGAAN RKEKNNILSM NVSADEQEDS MSIAKPVTPT LKTNLKKQTN KKMKTVSLLS RTVLHLCSSS KTNLKRQKIL KESKANLKKQ
101: KKTERERKKK EDSCCFGCEE AYENNDETIF VKGFQHLRPR DEIKNELSNI FGSCGKIISV FVPMQCGTCV PLGFAFINLL NGKEKALKLN GSYMGGRKLK
201: VMMATDSDEY FGFDDFDGCD LCGGPGKLRS RRPIDFDEVS FELYH

Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.