Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91458 | Canola | nucleus | 84.86 | 69.47 |
| CDX91454 | Canola | nucleus | 81.62 | 67.11 |
| CDY54454 | Canola | nucleus | 81.08 | 63.83 |
| CDX91450 | Canola | nucleus | 66.49 | 59.13 |
| CDX91456 | Canola | mitochondrion | 40.54 | 52.82 |
| CDY09605 | Canola | mitochondrion, plastid | 31.89 | 28.78 |
| CDY26273 | Canola | nucleus | 32.97 | 28.24 |
| CDX90410 | Canola | nucleus | 30.27 | 26.29 |
| CDY70171 | Canola | cytosol, nucleus, plastid | 32.97 | 24.9 |
| OQU82679 | Sorghum | nucleus | 21.08 | 23.35 |
| CDY09156 | Canola | cytosol | 37.3 | 22.26 |
| CDX90296 | Canola | nucleus | 35.14 | 20.63 |
| CDY12105 | Canola | plastid | 35.68 | 18.86 |
| CDX92253 | Canola | nucleus | 26.49 | 17.38 |
| CDX91457 | Canola | mitochondrion | 4.32 | 15.09 |
| CDY60074 | Canola | nucleus | 29.19 | 12.27 |
| CDY65178 | Canola | nucleus | 29.19 | 11.2 |
| Zm00001d018553_P001 | Maize | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 17.84 | 10.96 |
| CDY20455 | Canola | nucleus | 17.3 | 10.6 |
| CDX93706 | Canola | nucleus | 27.57 | 10.18 |
| CDY59893 | Canola | nucleus | 27.57 | 9.98 |
| CDX77274 | Canola | nucleus | 30.81 | 9.84 |
| CDY16474 | Canola | nucleus | 25.41 | 9.71 |
| CDX92252 | Canola | nucleus | 31.35 | 9.65 |
| CDX99340 | Canola | nucleus | 29.19 | 8.64 |
| CDX99339 | Canola | nucleus | 25.95 | 8.19 |
| CDX93704 | Canola | nucleus | 27.57 | 7.48 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 10.27 | 3.68 |
Protein Annotations
| EnsemblPlants:CDX91465 | EnsemblPlantsGene:GSBRNA2T00152807001 | Gene3D:3.30.70.330 | GO:A0A078DQ29 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| ncoils:Coil | PANTHER:PTHR43987 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX91465 | ProteinID:CDX91465.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE17D9 | MapMan:35.1 | : |
Description
BnaC04g06850D
Coordinates
chrLK031867:-:1239482..1240455
Molecular Weight (calculated)
20544.1 Da
IEP (calculated)
6.245
GRAVY (calculated)
-0.581
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQSKLKRCS ASSSSHAEAA AEATDPLQKA ERELDDLETE VDSRKKRKQE EETTEKKKKC CFGTKDAEGN NEHTIFVTGF DNSGSRDEIR SALAKHFSSC
101: GELTRVFVHI ECETGVSRGY AFINLKKRGG EIEAALSLNG SDLGGHKLLV TMARLRDEYY GHFNFKGCEI CYAILAAVFM LQSDC
101: GELTRVFVHI ECETGVSRGY AFINLKKRGG EIEAALSLNG SDLGGHKLLV TMARLRDEYY GHFNFKGCEI CYAILAAVFM LQSDC
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.