CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59893	Canola	nucleus	46.28	43.84
CDX93706	Canola	nucleus	45.04	43.51
CDY60074	Canola	nucleus	38.02	41.82
CDY65178	Canola	nucleus	40.5	40.66
CDX77274	Canola	nucleus	46.69	39.03
GSMUA_Achr10P...	Banana	nucleus	21.49	35.74
GSMUA_Achr11P...	Banana	nucleus	22.11	35.31
CDX92253	Canola	nucleus	18.18	31.21
CDX93704	Canola	nucleus	40.7	28.89
TraesCS7B01G183600.1	Wheat	nucleus	33.47	28.72
TraesCS7D01G289200.1	Wheat	nucleus	33.26	28.15
HORVU7Hr1G068630.2	Barley	nucleus	33.06	27.97
Os08t0192900-01	Rice	nucleus	33.06	27.97
CDX92252	Canola	nucleus	33.26	26.79
TraesCS7A01G286200.1	Wheat	nucleus	32.64	25.99
CDX99340	Canola	nucleus	33.06	25.6
CDX91465	Canola	nucleus	9.71	25.41
Solyc02g014310.2.1	Tomato	nucleus	32.23	24.72
PGSC0003DMT400003013	Potato	nucleus	30.99	23.96
EER94106	Sorghum	nucleus	32.64	23.8
Os04t0620700-01	Rice	nucleus	34.5	23.62
CDY20455	Canola	nucleus	14.05	22.52
CDX91456	Canola	mitochondrion	6.4	21.83
CDY54454	Canola	nucleus	10.54	21.7
EES14672	Sorghum	nucleus	28.51	21.33
TraesCS2D01G465200.1	Wheat	nucleus	32.02	21.2
TraesCS2A01G464300.3	Wheat	nucleus	32.02	21.17
TraesCS2B01G486000.4	Wheat	nucleus	31.2	20.71
Zm00001d049399_P001	Maize	plasma membrane	29.75	20.57
CDX91454	Canola	nucleus	9.5	20.44
Zm00001d032748_P001	Maize	nucleus	32.44	20.44
CDX91458	Canola	nucleus	9.3	19.91
CDX91450	Canola	nucleus	8.47	19.71
CDX99339	Canola	nucleus	22.31	18.43
CDY09605	Canola	mitochondrion, plastid	7.44	17.56
CDX91457	Canola	mitochondrion	1.86	16.98
CDX90410	Canola	nucleus	7.44	16.9
CDY26273	Canola	nucleus	7.23	16.2
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	16.94	15.89
CDY70171	Canola	cytosol, nucleus, plastid	7.85	15.51
CDY09156	Canola	cytosol	8.68	13.55
CDX90296	Canola	nucleus	8.68	13.33
CDY12105	Canola	plastid	8.47	11.71

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:A0A078FU32	UniProt:A0A078FU32	EnsemblPlants:CDY16474	ProteinID:CDY16474
ProteinID:CDY16474.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00091052001	InterPro:IPR000504	InterPro:IPR012677	InterPro:NUCL_RRM1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI0004EE4335	SEG:seg	:	:

Description

BnaA08g02930DBnaA08g02930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FU32]

Coordinates

chrLK032064:+:252821..260673

Molecular Weight (calculated)

51484.4 Da

IEP (calculated)

4.541

GRAVY (calculated)

-0.632

Length

484 amino acids

Sequence
(BLAST)

001: MFSKIAKKVP AKKAPAKADS SSEESSDDSS SDDEPVVAKK ATNGKVAKKT KDDSSSEEES SDDKPAAAAK NGSVKAKSES SSEEEDSSDE ESSDEEPATK
101: KPVAAKKPAA KAKDSSSSDD DDSSEYKSED EKPAAKKAAP ATKAASSSES SDEDSDEESE DEKPAPKKAI TKAAKKDSSS GESDSDESES EDEKETPKKK
201: NADPQQPKTP ATPATGGPKT LFAGNLSFQI ERSDVETFFK EAGEVVDVRF ATNKDDGSFR GFGHVEFASS EDAQKALELN GRALLGRDIR LDMAAERGDR
301: PAYNTPQSGG GNFRSGGGGG EGQKIFVKGF DSSLPEEDIR QALTQHFASC GEITRVSIPM DRETGASRGK AQRRRMTLMV LSWEDGILLS MRLNQGTAVV
401: VEDSVVAAVV VLVVAEVVVL VVVEEETVGV VVLAVVEMAV VVLVETMVVA VDSANLVSLP QSTRRLPLTI RSLRRRIFLC AQVF

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.