Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G464300.3 | Wheat | nucleus | 90.42 | 90.3 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 73.32 | 73.53 |
| GSMUA_Achr11P... | Banana | nucleus | 23.67 | 57.1 |
| GSMUA_Achr10P... | Banana | nucleus | 22.71 | 57.04 |
| Os04t0620700-01 | Rice | nucleus | 47.88 | 49.51 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 38.17 | 48.78 |
| CDY65178 | Canola | nucleus | 30.78 | 46.68 |
| VIT_05s0020g00100.t01 | Wine grape | mitochondrion | 8.34 | 45.86 |
| EER94106 | Sorghum | nucleus | 41.31 | 45.48 |
| Bra032269.1-P | Field mustard | nucleus | 27.36 | 45.45 |
| CDY60074 | Canola | nucleus | 27.36 | 45.45 |
| Zm00001d032748_P001 | Maize | nucleus | 47.33 | 45.05 |
| CDX93706 | Canola | nucleus | 28.73 | 41.92 |
| Bra018764.1-P | Field mustard | nucleus | 28.32 | 41.4 |
| AT1G48920.1 | Thale cress | nucleus | 31.05 | 40.75 |
| CDY59893 | Canola | nucleus | 28.32 | 40.51 |
| Bra022338.1-P | Field mustard | nucleus | 14.09 | 39.46 |
| Bra014162.1-P | Field mustard | nucleus | 31.05 | 39.07 |
| CDX92253 | Canola | nucleus | 14.91 | 38.65 |
| PGSC0003DMT400003013 | Potato | nucleus | 32.97 | 38.5 |
| CDX77274 | Canola | nucleus | 30.23 | 38.17 |
| Solyc02g014310.2.1 | Tomato | nucleus | 32.83 | 38.03 |
| KRH24189 | Soybean | nucleus | 34.2 | 33.6 |
| VIT_01s0011g02180.t01 | Wine grape | nucleus | 32.28 | 33.24 |
| KRH29160 | Soybean | nucleus | 33.93 | 33.16 |
| Bra018762.1-P | Field mustard | nucleus | 29.14 | 33.02 |
| AT3G18610.1 | Thale cress | nucleus | 28.73 | 33.02 |
| CDX93704 | Canola | nucleus | 30.64 | 32.84 |
| CDX92252 | Canola | nucleus | 26.81 | 32.61 |
| Bra022337.1-P | Field mustard | nucleus | 26.54 | 32.44 |
| CDX99340 | Canola | nucleus | 27.63 | 32.32 |
| CDY16474 | Canola | nucleus | 21.2 | 32.02 |
| CDY20455 | Canola | nucleus | 10.4 | 25.17 |
| CDX99339 | Canola | nucleus | 18.88 | 23.55 |
| KRH40855 | Soybean | nucleus | 19.43 | 20.7 |
| KRG89142 | Soybean | nucleus | 19.29 | 20.43 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 11.49 | 16.28 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G465200.1 | EnsemblPlantsGene:TraesCS2D01G465200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PFAM:PF00076 |
| PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:17.1.1.1.1 | : |
Description
No Description!
Coordinates
chr2D:+:571176918..571181549
Molecular Weight (calculated)
76226.0 Da
IEP (calculated)
4.679
GRAVY (calculated)
-1.183
Length
731 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSSKKSAV EVAPAAGLVP GGKSGKKGKR NAEDDIEKAV SAKKQKTAPE KAVPVKNDLK VKKKLPPKKV ESSSSDEDSS ESEDEVMVQP KKAAPSAKQE
101: SSSDSSDESS SDDEPAKKPA TASKKPAALA SNGSKKVKSD SSSSDSSSDE DVMVPPKKAA QSAKQESSSE GSDESSSDDE PAKKPAAASK KPAAKTEDSD
201: SSSSDEDEDM LPAKAPATAK KIEESSESSD SESSDSEKPA TEVKNSVVAT AQKKNQDGSD SDSDDSSDED MATKKPVAKK VVESSESSDS DSEEEDTTAK
301: PVQSSKAGKK GKESSDSSDS DSDSDSEEDT TAKTVSVKKE ESSGSSDSDS DSDSDEPAKS TIPAKRPLTT EKKSEHSKDD SDDSSDESDE EEPPQKKPKD
401: SSSGAAKPVS KAAKKESSDD DDSSEESSDS DEEKSKSVSV AKPKQNEPKT PASSGQATTG SKTLFVGNLS YNVETEQVKQ FFGEAGEVMD IRFATADDGS
501: FKGFAHVEFA TTEAAQKAYE LNGGDLAGRP VRLDFARERG AITPGSGRDN SSFKKPGQSN TAFVRGFDSS LGEEEIRSSL QGHFSSCGDI RRVSIPKDYD
601: TGASKGIAYI EFDDISSLPK ALELNGSNIG EGLSLFVDEA KPRADNRDGA DSGNRSAGRF NGGGGRRGRF DGGGGRRGGR FDGGAGRRGG GRFGRGDRGG
701: RSDRGRGRGG APPRQSAGTP SAGKKITFGD D
101: SSSDSSDESS SDDEPAKKPA TASKKPAALA SNGSKKVKSD SSSSDSSSDE DVMVPPKKAA QSAKQESSSE GSDESSSDDE PAKKPAAASK KPAAKTEDSD
201: SSSSDEDEDM LPAKAPATAK KIEESSESSD SESSDSEKPA TEVKNSVVAT AQKKNQDGSD SDSDDSSDED MATKKPVAKK VVESSESSDS DSEEEDTTAK
301: PVQSSKAGKK GKESSDSSDS DSDSDSEEDT TAKTVSVKKE ESSGSSDSDS DSDSDEPAKS TIPAKRPLTT EKKSEHSKDD SDDSSDESDE EEPPQKKPKD
401: SSSGAAKPVS KAAKKESSDD DDSSEESSDS DEEKSKSVSV AKPKQNEPKT PASSGQATTG SKTLFVGNLS YNVETEQVKQ FFGEAGEVMD IRFATADDGS
501: FKGFAHVEFA TTEAAQKAYE LNGGDLAGRP VRLDFARERG AITPGSGRDN SSFKKPGQSN TAFVRGFDSS LGEEEIRSSL QGHFSSCGDI RRVSIPKDYD
601: TGASKGIAYI EFDDISSLPK ALELNGSNIG EGLSLFVDEA KPRADNRDGA DSGNRSAGRF NGGGGRRGRF DGGGGRRGGR FDGGAGRRGG GRFGRGDRGG
701: RSDRGRGRGG APPRQSAGTP SAGKKITFGD D
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.