CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40855	Soybean	nucleus	72.75	73.18
GSMUA_Achr10P...	Banana	nucleus	15.94	37.8
GSMUA_Achr11P...	Banana	nucleus	16.23	36.96
VIT_05s0020g00100.t01	Wine grape	mitochondrion	7.1	36.84
Bra022338.1-P	Field mustard	nucleus	12.32	32.57
Bra032269.1-P	Field mustard	nucleus	19.42	30.45
Bra018764.1-P	Field mustard	nucleus	19.42	26.8
Os08t0192900-01	Rice	nucleus	21.01	25.35
HORVU7Hr1G068630.2	Barley	nucleus	20.43	24.65
TraesCS7D01G289200.1	Wheat	nucleus	20.29	24.48
Bra014162.1-P	Field mustard	nucleus	20.43	24.27
TraesCS7B01G183600.1	Wheat	nucleus	19.71	24.11
TraesCS7A01G286200.1	Wheat	nucleus	20.43	23.19
PGSC0003DMT400003013	Potato	nucleus	21.01	23.16
AT1G48920.1	Thale cress	nucleus	18.7	23.16
Solyc02g014310.2.1	Tomato	nucleus	20.29	22.19
KRH29160	Soybean	nucleus	23.77	21.93
EER94106	Sorghum	nucleus	21.01	21.84
KRH24189	Soybean	nucleus	23.19	21.51
EES14672	Sorghum	nucleus	19.86	21.17
CDY20455	Canola	nucleus	9.13	20.86
Os04t0620700-01	Rice	nucleus	21.16	20.65
Bra018762.1-P	Field mustard	nucleus	18.84	20.16
TraesCS2B01G486000.4	Wheat	nucleus	21.01	19.89
Bra022337.1-P	Field mustard	nucleus	17.1	19.73
TraesCS2D01G465200.1	Wheat	nucleus	20.43	19.29
Zm00001d049399_P001	Maize	plasma membrane	19.57	19.29
Zm00001d032748_P001	Maize	nucleus	21.45	19.27
TraesCS2A01G464300.3	Wheat	nucleus	19.86	18.72
AT3G18610.1	Thale cress	nucleus	17.1	18.55
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	9.71	12.98

Protein Annotations

EntrezGene:100789712	MapMan:17.1.1.1.1	Gene3D:3.30.70.330	UniProt:A0A0R0E5I3	EMBL:ACUP02012187	EnsemblPlantsGene:GLYMA_20G004000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRG89142	ProteinID:KRG89142	ProteinID:KRG89142.1	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0003DE79D9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:366402..406506

Molecular Weight (calculated)

76801.8 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.901

Length

690 amino acids

Sequence
(BLAST)

001: MGNKSDPKAG ATAVPPLRIG KREGENEDEQ QVTAKKQKRD EVAEEQRIMD EIVSDDSFAD FEPDKNSEAK KDSLSKQEKK GKPDSANCSS SLESLADGSE
101: EDAGNMDIDE GYNSEECSEG TQEKMQVLPV KSSENSEKGI EEKDSKAPQE NPKMLSTPNE RNAGSKTIVT RNLSYSVERA DLENLFKPCG EVVDVRLHTD
201: AEGRFRGFGH VEFATAEAAQ KALQLNYTEL LRCRIRVVLA PQKHKHTANR SFHVNSSNLS HSFQRSERTQ PVKASEISGD WEQETESKII ANCKDLSATS
301: KTIYASNLAY SMEKDDMEFL FKNCGEIVDI RLHTDHNGRF KGHGHVEFAT TEAAQKALEL NNKVYLGRPV GVFIAKGKGE YTSNRSNWSK SFHQSEQTKP
401: IKSTESSEYC EEEVEGKASN SYWESSKRVA TLKEQNAPPK TIYVRNLSYR VEQADMENLF KECGKIVDVR LHRNHNGRLN GFGQVEFATA EAAKKALELH
501: NTELLRRPIG VDLAEEKGEY TYSRSNWSNS FQKCERAQSP TVFVTGFDSS LPAEKLKASL EEHFGSCGEI QRISIPTFPD SGAVKGFAHL GFKDVVSVRK
601: ALHLDQNELG GFPLRVEKAK PRRDNWGIGS GRDGRDNWGI GSGRDGGDHQ FGGRDGSGYT SRVGWGRSGG GGWHSLHFSD EDSGRKNHSY

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.