Factsheet for Zm00001d049399_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14672	Sorghum	nucleus	68.71	74.34
GSMUA_Achr10P...	Banana	nucleus	23.86	57.39
GSMUA_Achr11P...	Banana	nucleus	22.29	51.49
Os08t0192900-01	Rice	nucleus	41.86	51.22
TraesCS7D01G289200.1	Wheat	nucleus	41.71	51.05
TraesCS7B01G183600.1	Wheat	nucleus	39.57	49.11
HORVU7Hr1G068630.2	Barley	nucleus	39.86	48.78
TraesCS7A01G286200.1	Wheat	nucleus	39.0	44.9
CDY65178	Canola	nucleus	28.71	41.7
Bra032269.1-P	Field mustard	nucleus	25.29	40.23
CDY60074	Canola	nucleus	25.29	40.23
VIT_05s0020g00100.t01	Wine grape	mitochondrion	7.57	39.85
PGSC0003DMT400003013	Potato	nucleus	34.43	38.5
Solyc02g014310.2.1	Tomato	nucleus	34.29	38.03
CDY59893	Canola	nucleus	27.71	37.96
Bra022338.1-P	Field mustard	nucleus	14.0	37.55
AT1G48920.1	Thale cress	nucleus	29.43	36.98
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	15.86	36.88
Bra018764.1-P	Field mustard	nucleus	26.14	36.6
CDX93706	Canola	nucleus	25.86	36.13
CDX92253	Canola	nucleus	14.43	35.82
Bra014162.1-P	Field mustard	nucleus	29.57	35.63
Zm00001d032748_P001	Maize	nucleus	38.71	35.29
CDX77274	Canola	nucleus	29.14	35.23
VIT_01s0011g02180.t01	Wine grape	nucleus	34.43	33.94
CDX92252	Canola	nucleus	28.86	33.61
Bra022337.1-P	Field mustard	nucleus	28.29	33.11
KRH29160	Soybean	nucleus	35.0	32.75
KRH24189	Soybean	nucleus	34.57	32.53
CDX99340	Canola	nucleus	28.29	31.68
AT3G18610.1	Thale cress	nucleus	28.0	30.82
Bra018762.1-P	Field mustard	nucleus	28.0	30.39
CDY16474	Canola	nucleus	20.57	29.75
CDX93704	Canola	nucleus	28.29	29.03
CDX99339	Canola	nucleus	19.57	23.38
CDY20455	Canola	nucleus	9.43	21.85
KRH40855	Soybean	nucleus	20.14	20.55
KRG89142	Soybean	nucleus	19.29	19.57
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	11.14	15.12

Protein Annotations

EntrezGene:100194303	MapMan:17.1.1.1.1	Gene3D:3.30.70.330	ProteinID:AQK50253.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7URC3	InterPro:NUCL_RRM2
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000221099F	EnsemblPlantsGene:Zm00001d049399	EnsemblPlants:Zm00001d049399_P001	EnsemblPlants:Zm00001d049399_T001	SEG:seg

Description

Putative nucleolin-like family protein

Coordinates

chr4:+:29275420..29279643

Molecular Weight (calculated)

74482.0 Da

IEP (calculated)

4.836

GRAVY (calculated)

-1.208

Length

700 amino acids

Sequence
(BLAST)

001: MGKSSKKAAA VAAAPAAVPK GKKREAEEEI EKAVSAKKQK AAPPAKAVPT SKKDAKKSKK QPPPKKAESS SSDSEEDSES EEEVKKVQPK KAPAPKIAKQ
101: ESSDDDTSDE TSESDEEPAK KPAAKPLAAV AKNGSKTVKQ ESSSDEDSSE DESDDDSDDE PAKKAAAKPL GAVAKNGLKK GKQESSSDGS SSDDESDDDV
201: KPAAPLKKTS VAVAQKKKGD SSESDSDDDS DEEVPPKSKA PAATIKKEDS SESESESDSE VEDASKTQPA KRAASKMKDE SSDDSDTDED EEPPQKKQKE
301: ALSAAKKESS SEDEDDSSEE SSDDEPTKVE EKKAPKVSEN SGSEDESSED ESDKDSEEPA NTPKKAAVHA SEKKTATKEP KTPTGSQSES TEVNTLFMGN
401: VPWKAEFDDV KEFFEDVGEV VDVRFPTHDD GNRKGFCYVE FVSAEAAAKA YKEKQSKELH GREVRLDFAK GRSTQTPRSG NDGSFQKAAR GNSSSIFIRG
501: FDKNLSEDEI RSSLEQHFSD CGEMTRVSIP TDHESGAIKG MAYIDFKDQD SVSKALELSG SDIGGGYELY VDEAKPRGDG QRGGGRSGGR SGGRFGDRSG
601: GRRGGGRFGE RSGGRDGGGR FGGRRGGRDG GRGRGGRGFG NKHSAGTPSA GTTHPVIVKF TAFWFEQKNC RPVVSGFKKL EVTAVLPLIC TGKKTTFGDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.