Factsheet for Os08t0192900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23777608
golgi: 25047511
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G289200.1	Wheat	nucleus	58.04	58.04
GSMUA_Achr10P...	Banana	nucleus	29.37	57.73
TraesCS7B01G183600.1	Wheat	nucleus	56.64	57.45
GSMUA_Achr11P...	Banana	nucleus	29.72	56.11
HORVU7Hr1G068630.2	Barley	nucleus	55.77	55.77
TraesCS7A01G286200.1	Wheat	nucleus	53.67	50.49
Bra032269.1-P	Field mustard	nucleus	34.62	45.0
CDY60074	Canola	nucleus	34.62	45.0
Os04t0620700-01	Rice	nucleus	55.59	44.98
EES14672	Sorghum	nucleus	50.87	44.98
CDY65178	Canola	nucleus	36.71	43.57
Bra018764.1-P	Field mustard	nucleus	37.59	43.0
CDX93706	Canola	nucleus	37.06	42.32
Zm00001d049399_P001	Maize	plasma membrane	51.22	41.86
CDX77274	Canola	nucleus	41.43	40.93
AT1G48920.1	Thale cress	nucleus	39.69	40.75
VIT_05s0020g00100.t01	Wine grape	mitochondrion	9.44	40.6
CDY59893	Canola	nucleus	34.97	39.14
Bra022338.1-P	Field mustard	nucleus	17.83	39.08
Bra014162.1-P	Field mustard	nucleus	38.99	38.38
CDX92253	Canola	nucleus	18.71	37.94
PGSC0003DMT400003013	Potato	nucleus	39.51	36.1
Solyc02g014310.2.1	Tomato	nucleus	39.51	35.82
Bra018762.1-P	Field mustard	nucleus	38.64	34.26
CDY16474	Canola	nucleus	27.97	33.06
Bra022337.1-P	Field mustard	nucleus	34.44	32.94
CDX92252	Canola	nucleus	34.09	32.45
VIT_01s0011g02180.t01	Wine grape	nucleus	40.21	32.39
CDX93704	Canola	nucleus	37.94	31.82
AT3G18610.1	Thale cress	nucleus	35.14	31.6
CDX99340	Canola	nucleus	33.74	30.88
KRH24189	Soybean	nucleus	38.64	29.7
KRH29160	Soybean	nucleus	38.46	29.41
CDY20455	Canola	nucleus	12.06	22.85
CDX99339	Canola	nucleus	22.2	21.67
KRH40855	Soybean	nucleus	25.52	21.28
KRG89142	Soybean	nucleus	25.35	21.01
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	14.34	15.89

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EntrezGene:4344865	EMBL:AK103422	ProteinID:BAD05605.1	ProteinID:BAF23092.1
ProteinID:BAT04188.1	ncoils:Coil	ProteinID:EAZ41784.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504
InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0192900	EnsemblPlants:Os08t0192900-01
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44110	UniProt:Q6Z1C0	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000022F2A4	RefSeq:XP_015650883.1	SEG:seg	:

Description

RNA-binding nucleolinNucleotide-binding, alpha-beta plait domain containing protein. (Os08t0192900-01);Similar to H0714H04.9 protein. (Os08t0192900-02)

Coordinates

chr8:-:5422274..5426674

Molecular Weight (calculated)

60396.6 Da

IEP (calculated)

4.722

GRAVY (calculated)

-1.243

Length

572 amino acids

Sequence
(BLAST)

001: MGKASKKSVA VAVAPAAVPA KGKGGKKREA EDEIEKAVSA KKQKAAAAPP AKAVPAPKAD AKKAKKQPPP KKAASSSSGS SSEEDSSESE EEVKVQVKKT
101: TKPVKQESSS DESSDESSDD EDAKPADPVA NNGLKKGKPA SSDSESDSDD EMDEDEKPAA PVKKTSVTAQ KKKDDSDSSE SESDESDSDE DVPTKSKAPA
201: VAAKNDDSTD GSESESDSED EDAAPKGAAK KESSSDEEDD SSEESSDDEP KQPQQKKAQE ESSEESSEED SDEEDEKLAK TPKKKTPAAT KSQNDEPKTP
301: ASNQSQGTES ATLFMGNLSF NLNQDQVKEF FQEVGEVISV RLATHEDGSS RGFGHVQFAS SEEAKKALEL HGCDLDGRPV RLDLAHERGA YTPHSRNDTG
401: SFQKQNRGSS QSIFVKGFDS SLEESKIRES LEGHFADCGE ITRVSVPMDR ETGASKGIAY IDFKDQASFS KALELSGSDL GGYNLYVDEA KPKGDSRDGG
501: GRRGGRSGDR FGGRSGDRFG GRSGGRFGGR DGGRRGGRGG RDGGRRGGRG GFQSRQSAGT ASTGKKTTFG DE

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.