Factsheet for TraesCS7A01G286200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G289200.1	Wheat	nucleus	81.41	86.54
TraesCS7B01G183600.1	Wheat	nucleus	77.63	83.69
HORVU7Hr1G068630.2	Barley	nucleus	72.53	77.1
Os08t0192900-01	Rice	nucleus	50.49	53.67
GSMUA_Achr10P...	Banana	nucleus	25.49	53.26
GSMUA_Achr11P...	Banana	nucleus	25.49	51.16
VIT_05s0020g00100.t01	Wine grape	mitochondrion	10.36	47.37
EES14672	Sorghum	nucleus	46.05	43.28
Bra032269.1-P	Field mustard	nucleus	31.09	42.95
CDY60074	Canola	nucleus	31.09	42.95
CDY65178	Canola	nucleus	33.55	42.32
Bra022338.1-P	Field mustard	nucleus	16.94	39.46
Bra018764.1-P	Field mustard	nucleus	32.24	39.2
Zm00001d049399_P001	Maize	plasma membrane	44.9	39.0
CDX93706	Canola	nucleus	31.74	38.52
AT1G48920.1	Thale cress	nucleus	35.2	38.42
CDX92253	Canola	nucleus	17.43	37.59
CDY59893	Canola	nucleus	31.09	36.99
CDX77274	Canola	nucleus	35.03	36.79
Bra014162.1-P	Field mustard	nucleus	34.87	36.49
PGSC0003DMT400003013	Potato	nucleus	36.51	35.46
TraesCS2A01G464300.3	Wheat	nucleus	42.27	35.11
Solyc02g014310.2.1	Tomato	nucleus	34.54	33.28
CDY16474	Canola	nucleus	25.99	32.64
KRH24189	Soybean	nucleus	37.99	31.05
Bra018762.1-P	Field mustard	nucleus	32.89	31.01
VIT_01s0011g02180.t01	Wine grape	nucleus	36.02	30.85
KRH29160	Soybean	nucleus	37.5	30.48
CDX92252	Canola	nucleus	29.61	29.95
Bra022337.1-P	Field mustard	nucleus	29.28	29.77
CDX93704	Canola	nucleus	33.22	29.62
CDX99340	Canola	nucleus	30.26	29.44
AT3G18610.1	Thale cress	nucleus	30.76	29.4
CDY20455	Canola	nucleus	11.68	23.51
CDX99339	Canola	nucleus	20.89	21.67
KRG89142	Soybean	nucleus	23.19	20.43
KRH40855	Soybean	nucleus	22.86	20.26
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	12.01	14.15

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44110
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7A01G286200
EnsemblPlants:TraesCS7A01G286200.1	TIGR:cd12451	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:-:333103555..333107707

Molecular Weight (calculated)

63586.7 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.902

Length

608 amino acids

Sequence
(BLAST)

001: MGKSSKKSAA PTVVAPAAVL TKGKAGKKRE ADDEIKKAVS AKKQKAAPAK AVPGPKEAAK KAKKQPPPKK VESSSSEEQS SESEEEEVPK KTAKPVKHES
101: SDDSSDDSSS DEEPAKKPSA KPVTPAASNG SKKGKPESSS SSSEDESDDD EKPAALVKKT PVIESDSSES DSDDSSDEDV PAKTPAAAAK KVDSSDSSES
201: ESESEDEEKS KKAAQATKIA PAAAKRKEEP SDSSDSDESD EEPPQKKLKD AAKVTPKSAK KDSTSDDDSS DESSDDEPKK KVTTASKSQK EEPKTPASNK
301: GQATGSKTLW MGNLSFNIEY DQVKQFFAQI GEVVDVRLAT HEDGHPKGFG HVEFATAEDA QKALDSLNGG DLMGRPVRLD MAAERGATPR TRDGGSFGKP
401: SGGPSLSVFV KGFDSSQQED AIRSSLQEHF SKCGEITRVS VPMDYENGAS KGIAYMDFTD ESSFSKALEL SGSDLGGCNL YVAEAKPKGQ FGGVGGRSGG
501: RDGGRSGGGR FGRSGGRDGG GRFGRSGGRD GGGRFGRSGG RDGGRGGGRG FQSRQSAGTA SAGNATAACL DDCIPVFPII LVDLVSFVCS IFLPLYVVMP
601: EFYYICYT

Best Arabidopsis Sequence Match ( AT3G18610.3 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPMKKQT AVLEKAKAES SSSDDGSSSD EEPTPAKKEP
201: IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS EEDSDEEESD DEKPPTKKAK VSSKTSKQES
301: SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE
401: FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR SHFSKCGEVT RVHVPTDRET GASRGFAYID
501: LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS DRGAPRGRFS TRGRGPSKPS VMESSKGTKT
601: VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.