Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60074 | Canola | nucleus | 48.29 | 61.14 |
| Bra032269.1-P | Field mustard | nucleus | 48.29 | 61.14 |
| CDY59893 | Canola | nucleus | 53.5 | 58.32 |
| CDX93706 | Canola | nucleus | 52.24 | 58.08 |
| Bra018764.1-P | Field mustard | nucleus | 52.06 | 58.0 |
| CDY65178 | Canola | nucleus | 49.37 | 57.05 |
| GSMUA_Achr10P... | Banana | nucleus | 24.6 | 47.08 |
| VIT_05s0020g00100.t01 | Wine grape | mitochondrion | 11.13 | 46.62 |
| GSMUA_Achr11P... | Banana | nucleus | 25.31 | 46.53 |
| Bra018762.1-P | Field mustard | nucleus | 50.27 | 43.41 |
| CDX93704 | Canola | nucleus | 50.81 | 41.5 |
| Os08t0192900-01 | Rice | nucleus | 40.75 | 39.69 |
| PGSC0003DMT400003013 | Potato | nucleus | 43.09 | 38.34 |
| AT3G18610.1 | Thale cress | nucleus | 43.27 | 37.89 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 38.24 | 37.77 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 38.42 | 37.41 |
| Solyc02g014310.2.1 | Tomato | nucleus | 42.37 | 37.4 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 37.88 | 36.89 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 38.42 | 35.2 |
| EER94106 | Sorghum | nucleus | 40.57 | 34.04 |
| Os04t0620700-01 | Rice | nucleus | 41.29 | 32.53 |
| EES14672 | Sorghum | nucleus | 37.34 | 32.15 |
| VIT_01s0011g02180.t01 | Wine grape | nucleus | 40.4 | 31.69 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 40.93 | 31.28 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 40.75 | 31.05 |
| Zm00001d032748_P001 | Maize | nucleus | 41.47 | 30.08 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 39.5 | 30.05 |
| Zm00001d049399_P001 | Maize | plasma membrane | 36.98 | 29.43 |
| KRH29160 | Soybean | nucleus | 38.24 | 28.48 |
| KRH24189 | Soybean | nucleus | 36.62 | 27.42 |
| AT1G72800.1 | Thale cress | nucleus | 16.16 | 26.87 |
| AT1G73490.2 | Thale cress | nucleus | 9.69 | 20.77 |
| KRH40855 | Soybean | nucleus | 23.88 | 19.39 |
| KRG89142 | Soybean | nucleus | 23.16 | 18.7 |
Protein Annotations
| MapMan:17.1.1.1.1 | Gene3D:3.30.70.330 | EntrezGene:841314 | ProteinID:AAG29744.1 | ProteinID:AEE32367.1 | ArrayExpress:AT1G48920 |
| EnsemblPlantsGene:AT1G48920 | RefSeq:AT1G48920 | TAIR:AT1G48920 | RefSeq:AT1G48920-TAIR-G | EnsemblPlants:AT1G48920.1 | TAIR:AT1G48920.1 |
| Symbol:ATNUC-L1 | Unigene:At.25056 | EMBL:BT005793 | GO:GO:0000003 | GO:GO:0000478 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009653 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010305 | GO:GO:0010588 | GO:GO:0042254 |
| GO:GO:0048364 | GO:GO:0048366 | GO:GO:0048367 | GO:GO:0080056 | GO:GO:0080057 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_175322.1 | InterPro:NUCL_RRM1 | InterPro:NUCL_RRM2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000025 | PO:PO:0000035 | PO:PO:0000036 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004507 | PO:PO:0005017 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020006 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | UniProt:Q9FVQ1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000000C742 | SEG:seg |
Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
Coordinates
chr1:+:18098081..18101732
Molecular Weight (calculated)
58776.2 Da
IEP (calculated)
4.842
GRAVY (calculated)
-1.173
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.