Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82679 | Sorghum | nucleus | 12.24 | 24.55 |
| AT1G73490.2 | Thale cress | nucleus | 12.84 | 16.54 |
| AT1G48920.1 | Thale cress | nucleus | 26.87 | 16.16 |
| CDX91457 | Canola | mitochondrion | 2.39 | 15.09 |
| Zm00001d018553_P001 | Maize | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 12.54 | 13.95 |
| AT3G18610.1 | Thale cress | nucleus | 25.67 | 13.52 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:843611 | UniProt:A0A178W7C6 | ProteinID:AAG51838.1 | ProteinID:AEE35374.1 |
| ArrayExpress:AT1G72800 | EnsemblPlantsGene:AT1G72800 | RefSeq:AT1G72800 | TAIR:AT1G72800 | RefSeq:AT1G72800-TAIR-G | EnsemblPlants:AT1G72800.1 |
| TAIR:AT1G72800.1 | Unigene:At.26565 | EMBL:BT000952 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_565046.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAP14066.1 | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | UniProt:Q9CAJ2 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AC279 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9CAJ2]
Coordinates
chr1:+:27397089..27398500
Molecular Weight (calculated)
35336.5 Da
IEP (calculated)
4.854
GRAVY (calculated)
-0.228
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESSKLSAT TVEAAPAMIK AKDVISPSEK EESDQTEITK VSVLKNLDEK EMIKEFADRL QRLEAKVDLL VTKADLLAIK ADIQELLISA KGEKVPAMKT
101: SAKASSESDD SYMDTSSEDE SSSAEEPVNK PAASAAKPAT KDSLFSAGFK PAAKDSLFSA GFKPDSLFSA GFEPAAKDSL FSAGFKPGSL FSAGFEPAAK
201: DSLFSAGFKP DSLFSVGVKP AAKDSLFSVG VNGRSFSVTG FDASLPVDDI KSALSKYFSS FGEITRVFVP PSHGTGGSLG YAYIDLKEGA EKALELGRHD
301: VGGWDLVVGK AEPIRSGSTW PFPGRCGNQG RCTFC
101: SAKASSESDD SYMDTSSEDE SSSAEEPVNK PAASAAKPAT KDSLFSAGFK PAAKDSLFSA GFKPDSLFSA GFEPAAKDSL FSAGFKPGSL FSAGFEPAAK
201: DSLFSAGFKP DSLFSVGVKP AAKDSLFSVG VNGRSFSVTG FDASLPVDDI KSALSKYFSS FGEITRVFVP PSHGTGGSLG YAYIDLKEGA EKALELGRHD
301: VGGWDLVVGK AEPIRSGSTW PFPGRCGNQG RCTFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.