CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24189	Soybean	nucleus	80.35	80.78
GSMUA_Achr10P...	Banana	nucleus	22.86	58.76
GSMUA_Achr11P...	Banana	nucleus	22.86	56.44
Bra018764.1-P	Field mustard	nucleus	30.08	45.0
Bra032269.1-P	Field mustard	nucleus	26.07	44.32
TraesCS7D01G289200.1	Wheat	nucleus	32.49	42.48
Solyc02g014310.2.1	Tomato	nucleus	35.56	42.16
PGSC0003DMT400003013	Potato	nucleus	35.16	42.01
Bra022338.1-P	Field mustard	nucleus	14.57	41.76
TraesCS7B01G183600.1	Wheat	nucleus	31.02	41.13
HORVU7Hr1G068630.2	Barley	nucleus	31.28	40.91
Bra014162.1-P	Field mustard	nucleus	31.02	39.93
EES14672	Sorghum	nucleus	33.29	38.49
Os08t0192900-01	Rice	nucleus	29.41	38.46
AT1G48920.1	Thale cress	nucleus	28.48	38.24
TraesCS7A01G286200.1	Wheat	nucleus	30.48	37.5
EER94106	Sorghum	nucleus	32.09	36.14
Os04t0620700-01	Rice	nucleus	33.69	35.64
Zm00001d049399_P001	Maize	plasma membrane	32.75	35.0
Bra018762.1-P	Field mustard	nucleus	29.95	34.73
TraesCS2D01G465200.1	Wheat	nucleus	33.16	33.93
AT3G18610.1	Thale cress	nucleus	28.48	33.49
TraesCS2A01G464300.3	Wheat	nucleus	32.75	33.47
Bra022337.1-P	Field mustard	nucleus	26.74	33.44
TraesCS2B01G486000.4	Wheat	nucleus	32.49	33.33
Zm00001d032748_P001	Maize	nucleus	34.22	33.33
KRH40855	Soybean	nucleus	22.33	24.34
KRG89142	Soybean	nucleus	21.93	23.77

Protein Annotations

EntrezGene:100786132	MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EMBL:ACUP02006787	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G101500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LIT2	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH29160	ProteinID:KRH29160	ProteinID:KRH29160.1	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000233C836	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:7671726..7677571

Molecular Weight (calculated)

78325.3 Da

IEP (calculated)

5.207

GRAVY (calculated)

-1.188

Length

748 amino acids

Sequence
(BLAST)

001: MGKSSKKSAI KVDAAPAVVP PSKSAKKGGK RQAQDEIEKQ VSAKKQKIEE VAQKQKKEAK VQKKKESSSD DSSESEEEKP APKPVLSKKV PAKNGAALPK
101: KDKPVSSSSE DDSSDEDEVN AKKPHKVVAE KQKNGATVQK NKKESSSDDS SSDSEDEKPV AKAAVPSKKT PAKSSNISTP AKKGKPASSS SSSDSSEDDS
201: SDEDELATKK QMNEVKVQKG KEESSSDDSS SDSEDEKPAA KVAVPSKNQS AKNGTLSTLA KKGKPAASSS SSESSDDNSD EDEAPKTKVA PAAGKNGHAS
301: TKKTQPSESS DSDSSDSDSS SDEGKSKKKP TTAKLPTLPV APAKKVESSD DESSESSDED NDAKPAVTAV SKPSARAQKK VESSDSDDSS SDEDKGKMDI
401: DDDDDSSDES EEPQKKKAVK NSKESSDSSE EDSEDESEEK PSKTPQKRGR DVEMVDAALS EKKAPKTPVT PREESGTSKT LFVGNLPFSV ERADVEGFFK
501: DAGEVVDVRF ATDDTGKFKG FGHVEFATAE AAQNALGLNG QQLFNRELRL DLARERGAYT PNSSNWNNSS QKSERGQSQT IFVRGFDTSL GEDEIRGSLQ
601: EHFGSCGDIT RVSIPKDYES GAVKGFAYVD FGDADSMGKA LELHETELGG YTLTVDEAKP RDNQGSGGRG AGGRSGGGGR FGARGGGGGR FGARGGGGRF
701: GGSGGGGRFG GSGGGRFGGR GGGGRGRGNR PNLAAEGTGK KTKFADDE

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.