Factsheet for TraesCS2A01G464300.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G465200.1	Wheat	nucleus	90.3	90.42
TraesCS2B01G486000.4	Wheat	nucleus	72.54	72.84
GSMUA_Achr11P...	Banana	nucleus	23.77	57.43
GSMUA_Achr10P...	Banana	nucleus	22.81	57.39
Os04t0620700-01	Rice	nucleus	45.77	47.38
VIT_05s0020g00100.t01	Wine grape	mitochondrion	8.2	45.11
CDY65178	Canola	nucleus	29.23	44.4
Bra032269.1-P	Field mustard	nucleus	26.23	43.64
CDY60074	Canola	nucleus	26.23	43.64
Zm00001d032748_P001	Maize	nucleus	45.77	43.62
EER94106	Sorghum	nucleus	39.48	43.52
TraesCS7A01G286200.1	Wheat	nucleus	35.11	42.27
CDX93706	Canola	nucleus	27.46	40.12
Bra018764.1-P	Field mustard	nucleus	27.05	39.6
AT1G48920.1	Thale cress	nucleus	30.05	39.5
CDY59893	Canola	nucleus	27.32	39.14
Bra022338.1-P	Field mustard	nucleus	13.93	39.08
PGSC0003DMT400003013	Potato	nucleus	33.06	38.66
Solyc02g014310.2.1	Tomato	nucleus	33.2	38.51
CDX92253	Canola	nucleus	14.75	38.3
Bra014162.1-P	Field mustard	nucleus	29.64	37.35
CDX77274	Canola	nucleus	28.69	36.27
KRH24189	Soybean	nucleus	33.47	32.93
KRH29160	Soybean	nucleus	33.47	32.75
VIT_01s0011g02180.t01	Wine grape	nucleus	31.15	32.11
CDY16474	Canola	nucleus	21.17	32.02
Bra018762.1-P	Field mustard	nucleus	27.6	31.32
AT3G18610.1	Thale cress	nucleus	27.19	31.29
CDX92252	Canola	nucleus	25.55	31.11
CDX93704	Canola	nucleus	28.96	31.09
CDX99340	Canola	nucleus	26.5	31.04
Bra022337.1-P	Field mustard	nucleus	25.27	30.94
CDY20455	Canola	nucleus	10.11	24.5
CDX99339	Canola	nucleus	18.31	22.87
KRH40855	Soybean	nucleus	18.85	20.12
KRG89142	Soybean	nucleus	18.72	19.86
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	11.61	16.47

Protein Annotations

EnsemblPlants:TraesCS2A01G464300.3	EnsemblPlantsGene:TraesCS2A01G464300	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PFAM:PF00076
PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:17.1.1.1.1	:

Description

No Description!

Coordinates

chr2A:+:709842720..709847465

Molecular Weight (calculated)

76340.1 Da

IEP (calculated)

4.693

GRAVY (calculated)

-1.157

Length

732 amino acids

Sequence
(BLAST)

001: MGKSSKKSAV AVAPAAGLVP DGKSGKKGKR NAEDDIEKAA SGKKQKTAPE KAVPVKNYLK VKKVSPKKVK SSSSDEDSSE SEDEVMVQPK KAAPSAKQES
101: SSDSSDESSS DDEPAKKPAT ASKKPAALAS NGSKKVKSDS SSSDSSSDED VMVPPKKAAQ SAKQESSSDG SDESSSDDEP AKKPAAASKK PAAKTEDSDS
201: SSSDEDEDML PAKAPATAKK IEESSESSDS ESSDSEKPAT EVKNSAVATA QKKNQDGSDS DSDESSDEDM VTKKPVAKKV VESSESSDSD SEEEDTTAKP
301: VQSSKAVAVK KGKESSDSSD SDSDSDSEED TTAKTVSVKK EESSGSSDSD SDSDSDEPAK STIPAKRPLT TEKKSEHSKD DSDDSSDESD EEEPPQKKPK
401: DSSSGAAKPV SKAAKKESSD DDDSSEESSD SDEEKSKSVL VAKSKQNEPK TPASSGQATT GSKTLFVGNL SYNVETEQVK QFFGEAGEVM DIRFATADDG
501: SFKGFAHVEF ATTEAAQKAY ELNGGDLAGR PVRLDFARER GAITPGSGRD NSSFKKPGQS STAFVRGFDS SLGEDEIRSS LQDHFSSCGD IRRVSIPKDY
601: DTGASKGIAY IEFDDISSLP KALELNGSNI GEGLSLFVDE AKPRADNRDG ADSGNRSAGR FNGGGGRRGR FDGGGGRRGG RFDGGSGRRG GGRFGRGDRG
701: GRSDRGRGRG GAPPRQSAGT PSAGKKITFG DD

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.