CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022337.1-P	Field mustard	nucleus	93.51	93.98
CDX99340	Canola	nucleus	78.54	75.52
CDX92253	Canola	nucleus	23.46	50.0
CDX77274	Canola	nucleus	41.93	43.52
AT3G18610.1	Thale cress	nucleus	45.76	43.24
CDX93706	Canola	nucleus	35.44	42.52
CDY60074	Canola	nucleus	30.95	42.27
CDY65178	Canola	nucleus	33.44	41.7
GSMUA_Achr10P...	Banana	nucleus	19.47	40.21
GSMUA_Achr11P...	Banana	nucleus	19.97	39.6
CDY59893	Canola	nucleus	33.44	39.33
Os08t0192900-01	Rice	nucleus	32.45	34.09
CDY16474	Canola	nucleus	26.79	33.26
TraesCS7B01G183600.1	Wheat	nucleus	30.95	32.98
HORVU7Hr1G068630.2	Barley	nucleus	31.28	32.87
CDX93704	Canola	nucleus	36.94	32.55
Solyc02g014310.2.1	Tomato	nucleus	34.11	32.49
PGSC0003DMT400003013	Potato	nucleus	33.78	32.43
TraesCS7D01G289200.1	Wheat	nucleus	30.78	32.34
CDX99339	Canola	nucleus	31.28	32.08
CDX91465	Canola	nucleus	9.65	31.35
EER94106	Sorghum	nucleus	32.78	29.67
TraesCS7A01G286200.1	Wheat	nucleus	29.95	29.61
Zm00001d049399_P001	Maize	plasma membrane	33.61	28.86
Os04t0620700-01	Rice	nucleus	33.94	28.85
EES14672	Sorghum	nucleus	30.62	28.44
TraesCS2B01G486000.4	Wheat	nucleus	33.11	27.3
Zm00001d032748_P001	Maize	nucleus	34.28	26.82
TraesCS2D01G465200.1	Wheat	nucleus	32.61	26.81
CDX91456	Canola	mitochondrion	6.32	26.76
CDX91458	Canola	nucleus	9.82	26.11
TraesCS2A01G464300.3	Wheat	nucleus	31.11	25.55
CDY54454	Canola	nucleus	9.82	25.11
CDX91454	Canola	nucleus	9.32	24.89
CDX91450	Canola	nucleus	8.15	23.56
CDY20455	Canola	nucleus	11.81	23.51
CDY26273	Canola	nucleus	7.15	19.91
CDY09605	Canola	mitochondrion, plastid	6.49	19.02
CDX90410	Canola	nucleus	6.49	18.31
CDY09156	Canola	cytosol	9.32	18.06
CDY70171	Canola	cytosol, nucleus, plastid	7.15	17.55
CDY12105	Canola	plastid	9.32	16.0
CDX90296	Canola	nucleus	7.49	14.29
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	12.15	14.15
CDX91457	Canola	mitochondrion	1.16	13.21

Protein Annotations

EnsemblPlants:CDX92252	EnsemblPlantsGene:GSBRNA2T00153970001	Gene3D:3.30.70.330	GO:A0A078DTM5	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PFAM:PF00076	PFscan:PS50102	ProteinID:CDX92252	ProteinID:CDX92252.1	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0004EEE0AB	MapMan:17.1.1.1.1	:	:	:

Description

BnaA05g21550D

Coordinates

chrLK031871:-:1085935..1090140

Molecular Weight (calculated)

64750.3 Da

IEP (calculated)

5.225

GRAVY (calculated)

-1.119

Length

601 amino acids

Sequence
(BLAST)

001: MVKSKKESLT KVEAASLVST TKPSKKSKRD AEVDLDIKKK PKKQKKEVIQ AEKKAPPPKK VETSSSSSDS EEEVKIKKVT AKKPLSKKDD SSSEDSSSDE
101: EAVTVKKKPA ILKKAKAESS SSEDNSSSSD EEAAPPKKQP AVVTKAKAES SSSEDDSSSD EEVVPAKKQP AVVKKAKVES ISSEEESSSD EEPAPAKKEP
201: AVVKKDSSSE EESSSDEESV PAKKQPTVVK SVKPAAKDSS SSEDESDEDS DEESEDEKKK EPATKKLPAA AKTKSESSEE DSDDEESDDE KPPTKKAKVS
301: PTKTSKQESS SGESSEEESE DEKVTPKKKD TDVEMAEAEQ KSEAKQVKTQ TTQRPTTQAR GGSTTLFAGN LPFQIEKSDI EDFFKEVGGI VDVRFASDSD
401: GRLKGYGHFE FASVEAAQKA LNLNGKQLLG RTIRLSDANA KPAPRSSNAD GNFQSNRKGE GSQVKTIFVS RFDKSVAESD MRCALRGHFS DCGEITRISL
501: PCDQETGATR GMAYLDLKEE DGFNKALGLN GSELGGWKIL VLEGKPRGWN SDGNNSGDRF TATRPGRGRP GRVPPGRGRP GRPSKPSILA SAEGKKIVFD
601: D

Best Arabidopsis Sequence Match ( AT3G18610.3 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPMKKQT AVLEKAKAES SSSDDGSSSD EEPTPAKKEP
201: IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS EEDSDEEESD DEKPPTKKAK VSSKTSKQES
301: SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE
401: FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR SHFSKCGEVT RVHVPTDRET GASRGFAYID
501: LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS DRGAPRGRFS TRGRGPSKPS VMESSKGTKT
601: VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.