CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91465	Canola	nucleus	63.83	81.08
CDX91458	Canola	nucleus	70.21	73.01
Bra005114.1-P	Field mustard	nucleus	72.34	72.65
CDX91454	Canola	nucleus	62.13	64.89
CDX91450	Canola	nucleus	54.89	62.02
CDX91456	Canola	mitochondrion	29.79	49.3
CDY09605	Canola	mitochondrion, plastid	25.53	29.27
CDY26273	Canola	nucleus	25.53	27.78
CDX90410	Canola	nucleus	23.83	26.29
OQU82679	Sorghum	nucleus	17.87	25.15
CDY70171	Canola	cytosol, nucleus, plastid	25.96	24.9
CDY09156	Canola	cytosol	30.21	22.9
CDX90296	Canola	nucleus	29.36	21.9
CDY12105	Canola	plastid	29.79	20.0
CDX92253	Canola	nucleus	21.28	17.73
CDX91457	Canola	mitochondrion	3.83	16.98
CDY60074	Canola	nucleus	22.98	12.27
CDY65178	Canola	nucleus	22.98	11.2
CDY20455	Canola	nucleus	14.04	10.93
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	13.62	10.63
CDY16474	Canola	nucleus	21.7	10.54
CDY59893	Canola	nucleus	22.13	10.18
CDX77274	Canola	nucleus	24.68	10.02
CDX92252	Canola	nucleus	25.11	9.82
CDX93706	Canola	nucleus	20.85	9.78
CDX99340	Canola	nucleus	23.83	8.96
CDX99339	Canola	nucleus	19.57	7.85
CDX93704	Canola	nucleus	20.85	7.18
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	10.21	4.65

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078IWQ4	UniProt:A0A078IWQ4	EnsemblPlants:CDY54454	ProteinID:CDY54454
ProteinID:CDY54454.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00014119001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI0004EE25A3	SEG:seg	:	:

Description

BnaAnng13210DBnaAnng13210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWQ4]

Coordinates

chrLK033321:+:26308..27423

Molecular Weight (calculated)

26633.7 Da

IEP (calculated)

9.236

GRAVY (calculated)

-0.519

Length

235 amino acids

Sequence
(BLAST)

001: MDESKLKRCS TSSTHAEASD EAIDPLQKAY KREFDDWETE VNNRKKQKQA EETTEKKKKC CFGTKDAKGN NEHTIFVTGF DNSGSRDEIR SALAKHFSSC
101: GELTRVFVHI ECETGVSRGY AFINLKNRGG EIEAALSLNG SDLGGHKLLV TMARLRDEYY AHFNFNGCEI CRASYAAGRQ RLYRWNLRTG GGKVRRMYVK
201: LLIVTIYPCY RICLVFNFVV LLQVSTISRK GPSSL

Best Arabidopsis Sequence Match ( AT1G73490.1 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.