CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91465	Canola	nucleus	52.82	40.54
CDX91458	Canola	nucleus	52.11	32.74
CDY54454	Canola	nucleus	49.3	29.79
CDX91454	Canola	nucleus	45.77	28.89
CDX91450	Canola	nucleus	41.55	28.37
CDY26273	Canola	nucleus	22.54	14.81
CDY09605	Canola	mitochondrion, plastid	20.42	14.15
OQU82679	Sorghum	nucleus	16.2	13.77
CDY70171	Canola	cytosol, nucleus, plastid	23.24	13.47
CDX90410	Canola	nucleus	19.01	12.68
CDX90296	Canola	nucleus	25.35	11.43
CDX92253	Canola	nucleus	22.54	11.35
CDY09156	Canola	cytosol	23.24	10.65
CDY12105	Canola	plastid	26.06	10.57
CDY60074	Canola	nucleus	28.17	9.09
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.01	8.97
CDY20455	Canola	nucleus	18.31	8.61
CDY65178	Canola	nucleus	28.17	8.3
CDX91457	Canola	mitochondrion	2.82	7.55
CDX93706	Canola	nucleus	26.06	7.39
CDY59893	Canola	nucleus	26.06	7.24
CDX77274	Canola	nucleus	28.87	7.08
CDY16474	Canola	nucleus	21.83	6.4
CDX92252	Canola	nucleus	26.76	6.32
CDX99340	Canola	nucleus	26.06	5.92
CDX93704	Canola	nucleus	26.76	5.57
CDX99339	Canola	nucleus	22.54	5.46
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	9.86	2.71

Protein Annotations

EnsemblPlants:CDX91456	EnsemblPlantsGene:GSBRNA2T00152789001	ncoils:Coil	ProteinID:CDX91456	ProteinID:CDX91456.1	SEG:seg
UniParc:UPI0004EF3D75	MapMan:35.2	:	:	:	:

Description

BnaC04g06940D

Coordinates

chrLK031867:+:1121562..1122592

Molecular Weight (calculated)

16152.4 Da

IEP (calculated)

10.325

GRAVY (calculated)

-0.892

Length

142 amino acids

Sequence
(BLAST)

001: MKGWKLTKKR PISNKISLVG LKKSAASSRD APHHHPPMLK QLLRLQILKK IIEELNDLET EVNCRKRQKQ EEETTEKKKK CCFGTKDAEG NNEHTIFVTG
101: FDNSGSRDEI RSALAKHFSS CGVISQWKRL GRSEASGYHG YT

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.