Factsheet for VIT_01s0011g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g00100.t01	Wine grape	mitochondrion	12.96	69.17
GSMUA_Achr10P...	Banana	nucleus	26.34	64.26
GSMUA_Achr11P...	Banana	nucleus	25.92	60.73
PGSC0003DMT400003013	Potato	nucleus	43.1	48.88
Solyc02g014310.2.1	Tomato	nucleus	41.69	46.91
Bra032269.1-P	Field mustard	nucleus	28.45	45.91
Bra022338.1-P	Field mustard	nucleus	16.76	45.59
TraesCS7D01G289200.1	Wheat	nucleus	33.38	41.43
TraesCS7B01G183600.1	Wheat	nucleus	32.82	41.31
Bra018764.1-P	Field mustard	nucleus	28.73	40.8
Bra014162.1-P	Field mustard	nucleus	33.38	40.79
AT1G48920.1	Thale cress	nucleus	31.69	40.4
HORVU7Hr1G068630.2	Barley	nucleus	32.54	40.38
Os08t0192900-01	Rice	nucleus	32.39	40.21
Os04t0620700-01	Rice	nucleus	38.31	38.47
Bra022337.1-P	Field mustard	nucleus	31.97	37.96
EER94106	Sorghum	nucleus	35.35	37.8
AT3G18610.1	Thale cress	nucleus	32.54	36.32
EES14672	Sorghum	nucleus	32.96	36.17
TraesCS7A01G286200.1	Wheat	nucleus	30.85	36.02
Zm00001d032748_P001	Maize	nucleus	38.31	35.42
Zm00001d049399_P001	Maize	plasma membrane	33.94	34.43
Bra018762.1-P	Field mustard	nucleus	31.27	34.42
TraesCS2B01G486000.4	Wheat	nucleus	33.8	32.92
TraesCS2D01G465200.1	Wheat	nucleus	33.24	32.28
TraesCS2A01G464300.3	Wheat	nucleus	32.11	31.15

Protein Annotations

EntrezGene:100262769	wikigene:100262769	MapMan:17.1.1.1.1	Gene3D:3.30.70.330	ProteinID:CCB50986	ProteinID:CCB50986.1
UniProt:F6HF46	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100262769	wikigene:LOC100262769	InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23236	PANTHER:PTHR23236:SF11	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000210A13D	ArrayExpress:VIT_01s0011g02180	EnsemblPlantsGene:VIT_01s0011g02180	EnsemblPlants:VIT_01s0011g02180.t01
unigene:Vvi.16001	RefSeq:XP_002277195	RefSeq:XP_002277195.2	RefSeq:XP_010648398.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:1891405..1898938

Molecular Weight (calculated)

74482.3 Da

IEP (calculated)

5.020

GRAVY (calculated)

-1.165

Length

710 amino acids

Sequence
(BLAST)

001: MGKSSKKSTP KVDATPVVTP PSKPTKKGKR QAEDSVEKVV SAKKQKKDNG VEQVVQKQKV EVKKQQKVET KKKKKEETSS SEDLTSSDSD EEPKATTASK
101: KGAIPAKPPA KATVEESSSD EESSSDEEPD SKVAVPSKKK PISASKNGTA AGPVAAAKKV SDSSSSDSSD DSDSDEEIKE ANKVSSQPKK LPATAKAAKN
201: GSVVAPKKKE ESSDSSDSDS SSDEEDEKAS KVASQAKKLP PSSQKNVPVA APKKAESSDS SDESDSDEEE PAAAKNVAAA KNVIAAAPKK KVQSSDSSSE
301: TSSEEEEEPQ KKPAPKEDSS EDDSSDESDE EPQKKKLKVP ASVPSNAGKS SSSEEESSDS EDEPSKIPLP KKATQVSKKS SGPEEDSSEE DSSEEESDEE
401: EPSKTPKKNG TDVEMVDAET PAKQTDSKSG KKAPKTPATP QVESTGSKTL FVGNLSFSVQ KEDVEHFFKD AGEVVDVRFS SDADGRFKGF GHVEFATPEA
501: AQKALKMNGK DLLGRAVRLD LARERGAYTP YSGKESNSFQ KGGSQAQTIF VRGFDKSGDE DQVRSTLEEY FGSCGDISRI SIPKDYESGS VKGIAYMDFT
601: DGDSFNKALE LNGTELGGYT LNVEEAKPRG DSRDGGGRSG GRSGGRDGGR FGGRRGGGRG GGGDRFGGGG GGRFSGGGGR FGGGGRGRGG FNKPNMGAAG
701: TGKKTTFNDE

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.