Factsheet for Bra012610.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90410	Canola	nucleus	81.25	73.24
Bra032377.1-P	Field mustard	nucleus, plastid	29.69	36.31
Bra020207.1-P	Field mustard	nucleus	47.92	32.97
Bra005114.1-P	Field mustard	nucleus	29.69	24.36
OQU82679	Sorghum	nucleus	16.15	18.56
Bra022338.1-P	Field mustard	nucleus	20.83	15.33
Bra032269.1-P	Field mustard	nucleus	22.4	9.77
Bra018764.1-P	Field mustard	nucleus	20.83	8.0
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.98	7.64
Bra014162.1-P	Field mustard	nucleus	22.92	7.57
Bra010724.1-P	Field mustard	nucleus	30.73	6.84
Bra018762.1-P	Field mustard	nucleus	20.83	6.2
Bra022337.1-P	Field mustard	nucleus	18.23	5.85

Protein Annotations

EnsemblPlants:Bra012610.1	EnsemblPlants:Bra012610.1-P	EnsemblPlantsGene:Bra012610	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002540A20
UniProt:M4D800	MapMan:35.2	:	:	:	:

Description

AT1G73490 (E=7e-020) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:+:23229316..23230659

Molecular Weight (calculated)

21132.3 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.504

Length

192 amino acids

Sequence
(BLAST)

001: MVKCGSGLSN GSADEQVEDS MPIAKPVTTT GETVLQPCSS SKTNLKRQKI HNESKANLKK QKETEREKED SCCYGCEGAT GNSLETIFVK GFQHLRPRDE
101: IKNELSNFFG SCGKVVRVFV PMQCVTCVPL GFIFIDYSNG ENEALKLNGS YMGGRKLEVK MATSSDEYYG FVNFAGCDLC RGPGKLNLRA RK

Best Arabidopsis Sequence Match ( AT1G73490.1 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.