Factsheet for Bra011769.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012258.1-P
Bra014835.1-P
Bra015735.1-P
Bra018036.1-P
Bra029917.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37490.1	Bra012258.1-P	AT1G20930.1	20706207
AT4G37490.1	Bra015735.1-P	AT1G76540.1	20706207
AT4G37490.1	Bra018036.1-P	AT3G48750.1	12065421
AT4G37490.1	Bra029917.1-P	AT3G48750.1	12065421
AT4G37490.1	Bra014835.1-P	AT3G54180.1	12065421

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69311	Canola	nucleus	94.16	96.18
AT4G37490.1	Thale cress	nucleus	82.71	82.71
Bra002046.1-P	Field mustard	nucleus	50.93	55.47
Bra028741.1-P	Field mustard	nucleus	52.1	53.73
TraesCSU01G217300.1	Wheat	cytosol	27.1	53.7
KRH66720	Soybean	endoplasmic reticulum, vacuole	24.53	52.76
Bra005880.1-P	Field mustard	nucleus, plastid	50.0	51.69
PGSC0003DMT400018480	Potato	nucleus	50.93	51.29
VIT_08s0040g00930.t01	Wine grape	nucleus	53.97	50.99
Solyc10g078330.1.1	Tomato	nucleus	50.23	50.83
KRH66715	Soybean	nucleus	46.5	50.77
KRG95055	Soybean	nucleus	52.34	49.23
Zm00001d019469_P001	Maize	extracellular	16.36	48.95
KRH66713	Soybean	nucleus	51.64	48.68
KXG24389	Sorghum	nucleus	28.5	48.41
VIT_13s0067g01420.t01	Wine grape	nucleus	52.1	48.27
HORVU0Hr1G001680.1	Barley	nucleus	35.98	48.12
KRH66718	Soybean	plastid	41.12	47.19
GSMUA_Achr4P10090_001	Banana	nucleus	46.73	47.06
GSMUA_Achr7P21380_001	Banana	nucleus	50.23	47.05
GSMUA_AchrUn_...	Banana	nucleus	32.71	46.98
PGSC0003DMT400072211	Potato	nucleus	50.47	46.55
Solyc10g080950.1.1	Tomato	nucleus	50.0	46.32
HORVU1Hr1G068080.1	Barley	plastid	36.22	45.32
KRG95056	Soybean	cytosol	40.42	44.7
GSMUA_Achr10P...	Banana	nucleus	47.2	44.59
GSMUA_Achr3P24980_001	Banana	nucleus	41.12	43.78
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	42.76	43.57
GSMUA_Achr8P23970_001	Banana	nucleus	44.16	43.45
TraesCS1D01G309400.1	Wheat	nucleus	44.16	43.25
HORVU3Hr1G078880.2	Barley	nucleus	45.56	43.05
TraesCS3D01G326600.1	Wheat	nucleus	45.56	42.86
Zm00001d012560_P002	Maize	nucleus, plastid	44.86	42.76
EES03772	Sorghum	nucleus, plastid	44.63	42.54
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	43.46	42.47
TraesCS1D01G309300.1	Wheat	nucleus, plastid	43.22	42.43
TraesCS1B01G320900.1	Wheat	nucleus, plastid	43.22	42.43
TraesCS3A01G333000.2	Wheat	nucleus	45.56	42.39
TraesCS3B01G363200.3	Wheat	nucleus	45.56	42.3
TraesCS1B01G321000.1	Wheat	nucleus	42.99	42.2
TraesCS1A01G309800.1	Wheat	nucleus	42.76	41.97
TraesCS3D01G195200.1	Wheat	plastid	40.19	41.65
TraesCS3A01G192100.1	Wheat	nucleus, plastid	39.72	41.06
HORVU1Hr1G068160.2	Barley	nucleus, plastid	42.29	40.86
HORVU0Hr1G026010.1	Barley	nucleus, plastid	42.29	40.86
Os01t0281200-01	Rice	nucleus	40.19	40.66
Zm00001d043164_P002	Maize	nucleus	45.79	40.5
Zm00001d010656_P001	Maize	nucleus	41.82	40.13
EES18429	Sorghum	mitochondrion	41.82	38.91
Os05t0493500-00	Rice	nucleus	42.99	37.78
EES02793	Sorghum	nucleus	40.19	37.15
Zm00001d008221_P001	Maize	nucleus	40.89	36.53
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	32.71	35.35
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	27.1	35.26
Bra037265.1-P	Field mustard	nucleus	33.18	34.72
Bra024504.1-P	Field mustard	nucleus	33.88	34.61
HORVU3Hr1G040990.2	Barley	nucleus, plastid	39.49	34.35
Bra017726.1-P	Field mustard	nucleus	31.78	33.5
Bra025831.1-P	Field mustard	nucleus	30.61	31.95
Bra016460.1-P	Field mustard	nucleus	30.61	31.95
Bra015762.1-P	Field mustard	nucleus	32.01	31.79
Zm00001d020033_P001	Maize	nucleus	39.25	30.88
Bra003727.1-P	Field mustard	nucleus	27.57	30.81
Bra015671.1-P	Field mustard	plastid	27.57	30.57
Bra033658.1-P	Field mustard	nucleus	25.23	30.34
Zm00001d020996_P001	Maize	nucleus	38.55	30.33
Bra022173.1-P	Field mustard	nucleus, plastid	26.4	29.97
Bra040793.1-P	Field mustard	nucleus	25.0	29.48
Bra032220.1-P	Field mustard	nucleus	24.3	29.13
Bra040792.1-P	Field mustard	nucleus, plastid	24.77	29.12
Bra040710.1-P	Field mustard	nucleus	25.23	29.11
Bra040753.1-P	Field mustard	nucleus, plastid	24.53	28.93
Bra000822.1-P	Field mustard	nucleus	25.47	28.91
Bra032202.1-P	Field mustard	plastid	28.27	28.67
Bra031463.1-P	Field mustard	nucleus	24.3	28.18
Bra026756.1-P	Field mustard	plastid	25.93	27.14
Bra023606.1-P	Field mustard	plastid	26.4	26.97
Bra008973.1-P	Field mustard	nucleus, plastid	26.17	25.63
Bra026065.1-P	Field mustard	nucleus	29.91	25.3
Bra003563.1-P	Field mustard	plastid	25.23	25.0
Bra016654.1-P	Field mustard	nucleus, plastid	25.0	24.04
Bra008477.1-P	Field mustard	plastid	25.0	23.41
Bra026120.1-P	Field mustard	nucleus	25.47	23.39
Bra035186.1-P	Field mustard	plastid	23.83	22.08
Bra016640.1-P	Field mustard	nucleus	32.48	21.22
Bra036544.1-P	Field mustard	nucleus	26.17	11.35

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EnsemblPlantsGene:Bra011769	EnsemblPlants:Bra011769.1	EnsemblPlants:Bra011769.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0001558	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	UniProt:M4D5L2	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI00025465F9	SEG:seg	:	:	:

Description

AT4G37490 (E=5e-159) CYC1, CYCB1;1, CYCB1 | CYCB1;1 (CYCLIN B1;1); cyclin-dependent protein kinase regulator

Coordinates

chrA01:+:645908..647738

Molecular Weight (calculated)

48536.4 Da

IEP (calculated)

8.400

GRAVY (calculated)

-0.371

Length

428 amino acids

Sequence
(BLAST)

001: MMASRSIVPQ QTTGDVVVIV EDDDKNAAKG RNRQVLRDIG NVVRRNHPKN IDPAKINHPR TRSQHAPLVE LVKPVARRVA VAVPKPKKRA EKPNDVEVIE
101: ISSDSDEEHG LEKKAAAKKK ISVSYTSVLT ARSKAACGLK KKEEIVDIDS VDAKNDLAAV EYVEDIYSFY KSVESEWRPT DYMRSQPEIN EKMRLILVEW
201: LIDVCVRFEL NPETFYLTVN IMDRFLSAKP IPRKELQLVG LSALLMSSKY EEIWPPQVED LADIADHAYS HKQILVMEKT ILSTLEWYLT VPTHYVFLAR
301: FIKASIADQR MENMVHYLAE LGVMHYDTTI MFSPSLVAAA AIYAARSALH QVPVWTSTLK HHTGYSETQL MDCAKLLAFQ QWKQQQQQQE EGSESKKGAL
401: RKKYSKEERF GVAMIPPAKS LLTGTDSA

Best Arabidopsis Sequence Match ( AT4G37490.1 )
(BLAST)

001: MMTSRSIVPQ QSTDDVVVVD GKNVAKGRNR QVLGDIGNVV RGNYPKNNEP EKINHRPRTR SQNPTLLVED NLKKPVVKRN AVPKPKKVAG KPKVVDVIEI
101: SSDSDEELGL VAAREKKATK KKATTYTSVL TARSKAACGL EKKQKEKIVD IDSADVENDL AAVEYVEDIY SFYKSVESEW RPRDYMASQP DINEKMRLIL
201: VEWLIDVHVR FELNPETFYL TVNILDRFLS VKPVPRKELQ LVGLSALLMS AKYEEIWPPQ VEDLVDIADH AYSHKQILVM EKTILSTLEW YLTVPTHYVF
301: LARFIKASIA DEKMENMVHY LAELGVMHYD TMIMFSPSMV AASAIYAARS SLRQVPIWTS TLKHHTGYSE TQLMDCAKLL AYQQWKQQEE GSESSTKGAL
401: RKKYSKDERF AVALIPPAKA LLTGTESA

Arabidopsis Description

CYCB1-1Cyclin-B1-1 [Source:UniProtKB/Swiss-Prot;Acc:P30183]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.