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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001010.1-P
Bra001415.1-P
Bra002236.1-P
Bra003644.1-P
Bra004810.1-P
Bra006091.1-P
Bra006664.1-P
Bra008222.1-P
Bra008983.1-P
Bra008984.1-P
Bra010508.1-P
Bra010728.1-P
Bra011568.1-P
Bra011642.1-P
Bra013108.1-P
Bra015165.1-P
Bra018036.1-P
Bra019845.1-P
Bra022660.1-P
Bra023311.1-P
Bra023312.1-P
Bra025260.1-P
Bra027579.1-P
Bra028187.1-P
Bra028409.1-P
Bra029227.1-P
Bra029917.1-P
Bra030844.1-P
Bra032991.1-P
Bra034380.1-P
Bra034402.1-P
Bra034824.1-P
Bra035427.1-P
Bra036764.1-P
Bra037664.1-P
Bra038550.1-P
Bra038667.1-P
Bra039089.1-P
Bra039131.1-P
Bra039578.1-P
Bra040507.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47220.1 Bra034402.1-P AT1G35720.1 20706207
AT1G47220.1 Bra036764.1-P AT1G35720.1 20706207
AT1G47220.1 Bra039578.1-P AT1G35720.1 20706207
AT1G47220.1 Bra035427.1-P AT1G59750.1 20706207
AT1G47220.1 Bra008222.1-P AT1G75750.1 20706207
AT1G47220.1 Bra029227.1-P AT1G75750.1 20706207
AT1G47220.1 Bra038550.1-P AT1G75750.1 20706207
AT1G47220.1 Bra003644.1-P AT1G78380.1 20706207
AT1G47220.1 Bra015165.1-P AT2G05710.1 20706207
AT1G47220.1 Bra019845.1-P AT2G05710.1 20706207
AT1G47220.1 Bra034380.1-P AT2G27970.1 20706207
AT1G47220.1 Bra004810.1-P AT2G44160.1 20706207
AT1G47220.1 Bra037664.1-P AT2G44160.1 20706207
AT1G47220.1 Bra001010.1-P AT3G01280.1 20706207
AT1G47220.1 Bra006664.1-P AT3G01280.1 20706207
AT1G47220.1 Bra039131.1-P AT3G01280.1 20706207
AT1G47220.1 Bra040507.1-P AT3G01280.1 20706207
AT1G47220.1 Bra001415.1-P AT3G11630.1 20706207
AT1G47220.1 Bra034824.1-P AT3G11630.1 20706207
AT1G47220.1 Bra038667.1-P AT3G11630.1 20706207
AT1G47220.1 Bra025260.1-P AT3G27240.1 20706207
AT1G47220.1 Bra032991.1-P AT3G27240.1 20706207
AT1G47220.1 Bra039089.1-P AT3G27240.1 20706207
AT1G47220.1 Bra018036.1-P AT3G48750.1 20706207
AT1G47220.1 Bra029917.1-P AT3G48750.1 20706207
AT1G47220.1 Bra013108.1-P AT4G09320.1 20706207
AT1G47220.1 Bra027579.1-P AT4G09320.1 20706207
AT1G47220.1 Bra030844.1-P AT4G09320.1 20706207
AT1G47220.1 Bra011568.1-P AT4G34870.1 20706207
AT1G47220.1 Bra010508.1-P AT4G35830.1 20706207
AT1G47220.1 Bra011642.1-P AT4G35830.1 20706207
AT1G47220.1 Bra010728.1-P AT4G38740.1 20706207
AT1G47220.1 Bra006091.1-P AT5G11170.1 20706207
AT1G47220.1 Bra008983.1-P AT5G11170.1 20706207
AT1G47220.1 Bra008984.1-P AT5G11170.1 20706207
AT1G47220.1 Bra023311.1-P AT5G11170.1 20706207
AT1G47220.1 Bra023312.1-P AT5G11170.1 20706207
AT1G47220.1 Bra002236.1-P AT5G19440.1 20706207
AT1G47220.1 Bra028187.1-P AT5G38480.1 20706207
AT1G47220.1 Bra028409.1-P AT5G38480.1 20706207
AT1G47220.1 Bra022660.1-P AT5G53560.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17039 Canola nucleus 98.9 98.9
Bra032220.1-P Field mustard nucleus 87.33 88.8
Bra040753.1-P Field mustard nucleus, plastid 88.15 88.15
AT1G47210.2 Thale cress nucleus 82.09 80.11
Bra033658.1-P Field mustard nucleus 69.15 70.51
AT1G47220.1 Thale cress nucleus 62.26 69.11
Bra040792.1-P Field mustard nucleus, plastid 68.59 68.41
Bra040710.1-P Field mustard nucleus 69.7 68.19
KRH52056 Soybean nucleus 36.36 62.56
VIT_18s0001g09580.t01 Wine grape nucleus, plastid 60.88 60.55
Solyc12g088530.1.1 Tomato nucleus 55.65 57.06
PGSC0003DMT400055428 Potato nucleus 57.58 56.79
GSMUA_Achr10P... Banana nucleus 49.04 56.15
Solyc04g078310.2.1 Tomato nucleus 57.3 56.06
OQU91386 Sorghum nucleus 40.22 55.94
PGSC0003DMT400030222 Potato nucleus 54.55 55.93
PGSC0003DMT400030176 Potato nucleus 54.82 55.9
KRH61375 Soybean nucleus 50.14 55.66
KRH15427 Soybean nucleus, plastid 55.37 55.22
KRH05614 Soybean nucleus 54.82 54.22
Solyc12g088520.1.1 Tomato nucleus 52.62 53.8
Solyc12g088500.1.1 Tomato nucleus 51.79 53.11
KRH61369 Soybean nucleus 47.66 52.91
Solyc12g088470.1.1 Tomato nucleus 52.34 52.78
KRH61371 Soybean nucleus 50.41 52.44
KRH52055 Soybean nucleus 51.24 51.96
TraesCS4D01G076900.1 Wheat nucleus 52.07 51.08
TraesCS4B01G078300.1 Wheat nucleus 51.52 50.4
KRH61373 Soybean nucleus, plastid 52.07 50.4
GSMUA_Achr2P21530_001 Banana cytosol, nucleus, plastid 39.67 50.35
HORVU4Hr1G013320.1 Barley nucleus 51.52 50.13
TraesCS4A01G236700.2 Wheat plastid 51.52 49.87
GSMUA_Achr6P11130_001 Banana nucleus 53.44 49.62
Zm00001d033365_P002 Maize nucleus 50.14 48.92
GSMUA_Achr2P21520_001 Banana nucleus 47.11 47.5
TraesCS5D01G084700.1 Wheat nucleus 49.31 47.35
TraesCS5A01G072000.1 Wheat plastid 49.04 47.34
TraesCS5B01G078200.1 Wheat plastid 49.04 47.21
Os12t0581800-01 Rice nucleus, plastid 49.04 46.23
Zm00001d013744_P001 Maize nucleus 44.63 45.38
Zm00001d030849_P001 Maize nucleus 50.69 43.5
TraesCS4D01G253200.1 Wheat nucleus 28.93 43.03
EES16237 Sorghum nucleus, plastid 50.41 42.76
Zm00001d041334_P001 Maize nucleus, plastid 49.31 40.96
TraesCS4B01G254000.1 Wheat nucleus 41.87 40.43
TraesCS4D01G253900.1 Wheat nucleus 41.87 40.0
TraesCS4A01G050700.1 Wheat nucleus 41.32 39.47
HORVU5Hr1G018820.2 Barley nucleus, plastid 49.31 39.43
EER95303 Sorghum nucleus, plastid 41.32 39.37
Bra031463.1-P Field mustard nucleus 39.67 39.02
Bra000822.1-P Field mustard nucleus 40.5 38.99
Bra026756.1-P Field mustard plastid 42.42 37.65
TraesCS4A01G051300.1 Wheat nucleus 34.71 36.73
Bra015671.1-P Field mustard plastid 38.57 36.27
TraesCS4B01G253100.1 Wheat nucleus 33.61 35.78
Bra023606.1-P Field mustard plastid 39.94 34.61
Bra022173.1-P Field mustard nucleus, plastid 35.81 34.48
Bra003563.1-P Field mustard plastid 40.5 34.03
Bra032202.1-P Field mustard plastid 39.39 33.89
HORVU4Hr1G069310.3 Barley nucleus 38.57 33.73
Bra016654.1-P Field mustard nucleus, plastid 41.32 33.71
Bra026120.1-P Field mustard nucleus 42.42 33.05
Bra008477.1-P Field mustard plastid 40.77 32.39
Bra035186.1-P Field mustard plastid 40.5 31.82
Bra008973.1-P Field mustard nucleus, plastid 37.74 31.35
Bra002046.1-P Field mustard nucleus 32.23 29.77
Bra005880.1-P Field mustard nucleus, plastid 33.33 29.23
Bra024504.1-P Field mustard nucleus 33.33 28.88
Bra017726.1-P Field mustard nucleus 32.23 28.82
Zm00001d048127_P001 Maize plastid 37.74 28.6
Os03t0607600-00 Rice nucleus 47.66 28.45
Bra037265.1-P Field mustard nucleus 31.96 28.36
Bra028741.1-P Field mustard nucleus 32.23 28.19
Bra016460.1-P Field mustard nucleus 31.13 27.56
Bra003727.1-P Field mustard nucleus 28.65 27.15
Os03t0208700-00 Rice nucleus 30.3 26.89
Bra025831.1-P Field mustard nucleus 30.03 26.59
Bra015762.1-P Field mustard nucleus 31.13 26.22
Bra011769.1-P Field mustard nucleus 29.48 25.0
Bra026065.1-P Field mustard nucleus 27.55 19.76
Bra016640.1-P Field mustard nucleus 27.82 15.42
Bra036544.1-P Field mustard nucleus 40.22 14.79
Os03t0208800-00 Rice nucleus 13.77 12.59
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.1EnsemblPlantsGene:Bra040793EnsemblPlants:Bra040793.1EnsemblPlants:Bra040793.1-PInterPro:Cyclin-A_plant
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634UniProt:M4FI64PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF270SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI000253E8F0:::::
Description
AT1G47210 (E=4e-170) CYCA3;2 | cyclin family protein
Coordinates
chrScaffold000259:-:18722..20436
Molecular Weight (calculated)
41532.7 Da
IEP (calculated)
8.878
GRAVY (calculated)
-0.202
Length
363 amino acids
Sequence
(BLAST)
001: MTEKEICSRM TRAAVKRKST ATEDERVTKK RVVLGELPNL SNISVLSNFN QIPKPAKSLG ALLRKTAPVA SAAVEFGSDI DARSDDPKMC GPYVSDIYEY
101: LRQMEVKPKQ RPLPDYMEKV QKDVTPTMRG VLVDWLVEVA DEYKLLSETL HLTVSYIDRF LSLKTVNKKR LQLLGVSAML IASKYEEISP PKVEDFCYIT
201: DNTFSKQDVV KMEADILLTL QFELGRPTIN SFIRRFTRVA QEDFNVPHLQ LEPLSCYLSE LSILDYKAVK FLPSMLAASA VFLARFIIRP KQHPWNQMLE
301: EYTKYKAADL QECVGIIHDL YLRRRGGALQ AVRDKYKHHK FQCVATMPVS PVLPVTFWED VTI
Best Arabidopsis Sequence Match ( AT1G47210.2 )
(BLAST)
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.