Factsheet for Bra006664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024072.1-P
Bra031105.1-P
Bra036699.1-P
Bra039025.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	Bra031105.1-P	AT4G29130.1	17965176
AT3G01280.1	Bra036699.1-P	AT4G29130.1	17965176
AT3G01280.1	Bra039025.1-P	AT4G29130.1	17965176
AT3G01280.1	Bra024072.1-P	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040507.1-P	Field mustard	cytosol	97.83	97.83
Bra001010.1-P	Field mustard	mitochondrion	90.58	90.58
AT3G01280.1	Thale cress	cytosol, mitochondrion	86.96	86.96
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	90.58	76.69
KRH18503	Soybean	mitochondrion	74.28	74.28
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	74.28	74.28
KRH40133	Soybean	mitochondrion	73.55	73.55
KRH01127	Soybean	mitochondrion	73.55	73.55
VIT_14s0108g00010.t01	Wine grape	cytosol	72.83	72.83
PGSC0003DMT400005245	Potato	cytosol	72.83	72.83
Bra008723.1-P	Field mustard	cytosol	72.83	72.83
PGSC0003DMT400017754	Potato	cytosol	71.38	71.38
Solyc02g067460.2.1	Tomato	plastid	71.38	71.38
Solyc03g058920.2.1	Tomato	plastid	72.1	58.88
Bra031839.1-P	Field mustard	mitochondrion	13.41	57.81
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	50.72	50.72
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	50.36	50.36
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	48.19	48.19
Bra006817.1-P	Field mustard	cytosol	43.12	43.43
Bra002725.1-P	Field mustard	cytosol	21.38	37.11

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EnsemblPlantsGene:Bra006664	EnsemblPlants:Bra006664.1	EnsemblPlants:Bra006664.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020
GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	UniProt:M4CR23	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI00025401B1

Description

AT3G01280 (E=5e-137) VDAC1, ATVDAC1 | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1); voltage-gated anion channel

Coordinates

chrA03:-:4521727..4522654

Molecular Weight (calculated)

29353.7 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.181

Length

276 amino acids

Sequence
(BLAST)

001: MGKGPGLYTD IGKKARDLLY KDHNSDQKLS ITTYSPAGVA ITSTGTKKGE SLLGDVVFQL KQKNITTDFK VSTDNTVLIT ATVDEAAPGL KSIFSFKAPD
101: QNSGKIELQY LHDYAGISTS MGLTQNPTVN FSGVIGNNAL AVGTDVSFDT KSGNFTKINA GLNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVNHKFSSKV NTITVGTQHS IDPLTMVKAR VNSAGIANAL IQHEWSPKSF FTVSGEVDTK AIDKSAKVGL ALSLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.