Factsheet for Bra012915.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02103	Canola	cytosol, mitochondrion, nucleus	98.55	98.55
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	83.7	83.7
Bra031839.1-P	Field mustard	mitochondrion	19.2	82.81
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	82.61	82.61
AT3G49920.1	Thale cress	cytosol	64.13	78.32
VIT_07s0129g00170.t01	Wine grape	cytosol	69.93	69.93
KRH28358	Soybean	mitochondrion	68.12	68.12
CDY23028	Canola	mitochondrion	52.54	67.13
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	66.67	66.67
PGSC0003DMT400055247	Potato	cytosol	66.3	66.3
Solyc02g092440.2.1	Tomato	plastid	65.94	65.94
VIT_07s0129g00100.t01	Wine grape	cytosol	26.81	64.91
PGSC0003DMT400023484	Potato	cytosol	64.13	64.6
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	64.13	64.6
GSMUA_AchrUn_...	Banana	cytosol	63.41	63.64
TraesCS4D01G258900.1	Wheat	cytosol	60.87	61.09
TraesCS4A01G046000.1	Wheat	plastid	60.87	60.65
TraesCS4B01G259600.1	Wheat	cytosol	60.87	60.65
HORVU4Hr1G070150.3	Barley	plasma membrane	60.14	59.93
GSMUA_Achr5P08710_001	Banana	cytosol	59.42	59.64
GSMUA_Achr7P26190_001	Banana	cytosol	58.33	58.55
EER92681	Sorghum	mitochondrion	57.61	57.82
Zm00001d048149_P002	Maize	mitochondrion	57.25	57.45
Zm00001d028102_P001	Maize	mitochondrion	56.52	56.73
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	55.8	55.6
Bra040507.1-P	Field mustard	cytosol	48.19	48.19
Bra006664.1-P	Field mustard	cytosol	48.19	48.19
Bra001010.1-P	Field mustard	mitochondrion	45.65	45.65
Bra008723.1-P	Field mustard	cytosol	44.93	44.93
Bra006817.1-P	Field mustard	cytosol	44.57	44.89
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	48.19	40.8
Bra002725.1-P	Field mustard	cytosol	22.83	39.62

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EnsemblPlantsGene:Bra012915	EnsemblPlants:Bra012915.1	EnsemblPlants:Bra012915.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614	UniProt:M4D8V5	PFAM:PF01459
PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI00025405F1	:

Description

AT5G67500 (E=4e-133) VDAC2, ATVDAC2 | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated anion channel

Coordinates

chrA03:-:21529458..21530757

Molecular Weight (calculated)

29825.5 Da

IEP (calculated)

9.597

GRAVY (calculated)

-0.170

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPGLFAD IGKKARDLLT RDYNTDQKFS ISTNTLSGVA LTSTVLKKGV VHAADVSTQY KYRNALFDVK IDTDSNVMTT ITITEILPST KAIASFKVPD
101: YNSSKLEVQY FHDHATVTAT AALKQNPLVD LTATLGSPTI SFGAEAGYDT TSRSFTKYNF GISVTKPDKC ASIILGDKAD SIKASYLQHL DESKRSAAVG
201: EVYRKFSTNE NVITVGGLYA VDHLTSVKAK LNSNGKLGAL VQHEVLPKSI VTISGEIDTK TLEKYPRFGL SLALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.