Factsheet for HORVU4Hr1G070150.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G046000.1	Wheat	plastid	97.83	97.83
TraesCS4B01G259600.1	Wheat	cytosol	97.83	97.83
TraesCS4D01G258900.1	Wheat	cytosol	96.75	97.45
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	82.67	82.67
Zm00001d048149_P002	Maize	mitochondrion	81.95	82.55
EER92681	Sorghum	mitochondrion	81.59	82.18
Zm00001d028102_P001	Maize	mitochondrion	81.23	81.82
Bra031839.1-P	Field mustard	mitochondrion	16.25	70.31
GSMUA_Achr7P26190_001	Banana	cytosol	68.59	69.09
CDY43581	Canola	mitochondrion	15.88	68.75
GSMUA_AchrUn_...	Banana	cytosol	67.51	68.0
KRH28358	Soybean	mitochondrion	66.79	67.03
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	66.79	67.03
VIT_07s0129g00100.t01	Wine grape	cytosol	27.44	66.67
GSMUA_Achr5P08710_001	Banana	cytosol	66.06	66.55
VIT_07s0129g00170.t01	Wine grape	cytosol	65.7	65.94
PGSC0003DMT400055247	Potato	cytosol	65.7	65.94
Solyc02g092440.2.1	Tomato	plastid	64.98	65.22
PGSC0003DMT400023484	Potato	cytosol	63.54	64.23
CDY18662	Canola	cytosol	63.9	64.13
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	63.18	63.87
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	63.54	63.77
CDX81312	Canola	cytosol, mitochondrion, nucleus	63.18	63.41
CDY08723	Canola	cytosol, nucleus, plastid	62.09	62.32
CDY36497	Canola	cytosol, nucleus, plastid	61.73	61.96
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	61.73	61.96
AT3G49920.1	Thale cress	cytosol	49.46	60.62
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.93	60.14
CDY02103	Canola	cytosol, mitochondrion, nucleus	58.84	59.06
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	60.65	55.08
KRH15450	Soybean	cytosol	53.43	53.43
KRH05595	Soybean	plastid	47.65	52.59
HORVU3Hr1G013220.1	Barley	cytosol	16.97	46.53
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	44.4	44.73
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	16.25	44.55
VIT_18s0001g09120.t01	Wine grape	mitochondrion	12.27	40.48
CDY23028	Canola	mitochondrion	29.6	37.96
HORVU1Hr1G080370.2	Barley	plastid	44.77	37.58
HORVU3Hr1G067610.2	Barley	mitochondrion	41.88	33.43
HORVU7Hr1G034770.11	Barley	plastid	30.69	12.34

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:AK360158	UniProt:F2D8E6	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085
GO:GO:0098656	EnsemblPlantsGene:HORVU4Hr1G070150	EnsemblPlants:HORVU4Hr1G070150.3	InterPro:IPR023614	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0002005868
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D8E6]

Coordinates

chrchr4H:-:574543292..574547361

Molecular Weight (calculated)

29469.3 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.102

Length

277 amino acids

Sequence
(BLAST)

001: MAMKGPGLFT DIGKKAKDLL TRDYTYDQKL SVSTVSSSGV AVTSTAVKKG GLYSLDVASA YKYKNTLVDV KVDTESNIST TLTVLDVLPS TKLVTSVKFP
101: DYNAGKVEVQ YFHDNATFAA AVGMKPSPMV DFSVVVGPKG LAFGGEAGFD TSSGKFTKYT AGFSVTKPDF HASAILADKG DTIKVSGVYH LDEKQKASAV
201: AEFTRKLSTN ENTLTVGGLY TVDPQTAVKA RLNNTGKLAA LLQHEVKPKS LLTISGEFDT KALDRAPKFG LSLVLKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.