Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012915.1-P | Field mustard | cytosol, mitochondrion, nucleus | 98.55 | 98.55 |
| CDY18662 | Canola | cytosol | 82.61 | 82.61 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 82.25 | 82.25 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 81.52 | 81.52 |
| CDY43581 | Canola | mitochondrion | 18.84 | 81.25 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 81.16 | 81.16 |
| AT3G49920.1 | Thale cress | cytosol | 62.68 | 76.55 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 68.48 | 68.48 |
| KRH28358 | Soybean | mitochondrion | 66.67 | 66.67 |
| CDY23028 | Canola | mitochondrion | 51.45 | 65.74 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 65.58 | 65.58 |
| PGSC0003DMT400055247 | Potato | cytosol | 64.86 | 64.86 |
| Solyc02g092440.2.1 | Tomato | plastid | 64.49 | 64.49 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 63.04 | 63.5 |
| PGSC0003DMT400023484 | Potato | cytosol | 63.04 | 63.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 62.32 | 62.55 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 25.36 | 61.4 |
| TraesCS4D01G258900.1 | Wheat | cytosol | 59.78 | 60.0 |
| TraesCS4A01G046000.1 | Wheat | plastid | 59.78 | 59.57 |
| TraesCS4B01G259600.1 | Wheat | cytosol | 59.78 | 59.57 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 59.06 | 58.84 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 58.33 | 58.55 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 57.61 | 57.82 |
| EER92681 | Sorghum | mitochondrion | 56.88 | 57.09 |
| Zm00001d048149_P002 | Maize | mitochondrion | 56.52 | 56.73 |
| Zm00001d028102_P001 | Maize | mitochondrion | 56.16 | 56.36 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 55.07 | 54.87 |
| CDY68122 | Canola | cytosol | 47.83 | 47.83 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 47.46 | 47.46 |
| CDY28690 | Canola | cytosol | 47.46 | 47.46 |
| CDY11866 | Canola | cytosol | 46.01 | 46.35 |
| CDX91952 | Canola | mitochondrion | 45.65 | 45.65 |
| CDX88625 | Canola | cytosol | 45.29 | 45.62 |
| CDX74294 | Canola | cytosol, mitochondrion | 44.93 | 44.93 |
| CDY59666 | Canola | cytosol | 13.04 | 44.44 |
| CDY69321 | Canola | cytosol | 44.2 | 44.2 |
| CDY59668 | Canola | cytosol | 43.84 | 43.84 |
| CDY63765 | Canola | cytosol | 43.84 | 43.84 |
| CDY38301 | Canola | cytosol | 21.01 | 34.94 |
| CDY25906 | Canola | plasma membrane | 38.77 | 31.85 |
| CDY70638 | Canola | cytosol, mitochondrion | 28.62 | 31.6 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 23.55 | 18.01 |
| CDY39954 | Canola | extracellular | 11.96 | 15.57 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078ERF4 | EnsemblPlants:CDY02103 | ProteinID:CDY02103 | ProteinID:CDY02103.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00113486001 | InterPro:IPR023614 |
| PFAM:PF01459 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF29 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniParc:UPI0004EEABCF |
Description
BnaA03g40640D
Coordinates
chrLK031932:+:153495..155090
Molecular Weight (calculated)
29852.6 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.175
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKGPGLFAD IGKKARDLLT RDYNTDQKFS ISTNTLSGFV LTSTVLKKGV VHAADVSTQY KSRNALFDVK IDTDSNVMTT ITITEILPST KAIASFKVPD
101: YNSSKLEVQY FHDHATVTAT AALKQNPLVD LTATLGSPTI SFGAEAGYDT TSRSFTKYNF GISVTKPDKC ASIILGDKAD SIKASYLQHL DESKRSAAVG
201: EVYRKFSTNE NVITVGGLYA VDHLTSVKAK LNSNGKLGAL VQHEVLPKSI VTISGEIDTK TLEKYPRFGL SLALKP
101: YNSSKLEVQY FHDHATVTAT AALKQNPLVD LTATLGSPTI SFGAEAGYDT TSRSFTKYNF GISVTKPDKC ASIILGDKAD SIKASYLQHL DESKRSAAVG
201: EVYRKFSTNE NVITVGGLYA VDHLTSVKAK LNSNGKLGAL VQHEVLPKSI VTISGEIDTK TLEKYPRFGL SLALKP
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.