Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11866 | Canola | cytosol | 61.31 | 75.18 |
| CDX88625 | Canola | cytosol | 61.01 | 74.82 |
| AT5G57490.1 | Thale cress | cytosol | 57.14 | 70.07 |
| CDY38301 | Canola | cytosol | 31.85 | 64.46 |
| VIT_11s0052g01030.t01 | Wine grape | cytosol | 44.35 | 53.79 |
| Solyc07g008350.2.1 | Tomato | cytosol, plastid | 41.96 | 51.09 |
| CDY43581 | Canola | mitochondrion | 9.52 | 50.0 |
| CDY59666 | Canola | cytosol | 11.9 | 49.38 |
| KRH02881 | Soybean | mitochondrion | 40.18 | 48.74 |
| KRH19015 | Soybean | cytosol | 39.88 | 48.38 |
| EER95548 | Sorghum | cytosol, mitochondrion | 36.01 | 43.84 |
| Os03t0137500-01 | Rice | mitochondrion | 35.42 | 43.12 |
| GSMUA_Achr8P14200_001 | Banana | extracellular, plasma membrane | 37.8 | 42.47 |
| Zm00001d027580_P001 | Maize | mitochondrion | 35.42 | 42.05 |
| TraesCS5A01G505700.1 | Wheat | nucleus | 34.23 | 41.97 |
| TraesCS4B01G336100.1 | Wheat | nucleus | 33.63 | 41.24 |
| TraesCS4D01G331900.1 | Wheat | nucleus | 33.63 | 41.24 |
| CDY18662 | Canola | cytosol | 32.14 | 39.13 |
| CDY59668 | Canola | cytosol | 32.14 | 39.13 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 31.85 | 38.77 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 31.85 | 38.77 |
| CDY69321 | Canola | cytosol | 31.85 | 38.77 |
| CDY63765 | Canola | cytosol | 31.55 | 38.41 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 31.55 | 38.41 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 30.95 | 37.68 |
| Zm00001d027578_P001 | Maize | peroxisome | 28.27 | 37.25 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 30.36 | 36.96 |
| CDY28690 | Canola | cytosol | 29.76 | 36.23 |
| CDY68122 | Canola | cytosol | 29.46 | 35.87 |
| CDX74294 | Canola | cytosol, mitochondrion | 29.17 | 35.51 |
| CDX91952 | Canola | mitochondrion | 29.17 | 35.51 |
| Zm00001d048362_P002 | Maize | endoplasmic reticulum, plasma membrane | 34.82 | 31.54 |
| CDY70638 | Canola | cytosol, mitochondrion | 22.62 | 30.4 |
| CDY23028 | Canola | mitochondrion | 17.56 | 27.31 |
| CDY39954 | Canola | extracellular | 8.63 | 13.68 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 12.5 | 11.63 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078GKI3 | UniProt:A0A078GKI3 | EnsemblPlants:CDY25906 | ProteinID:CDY25906 |
| ProteinID:CDY25906.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008308 |
| GO:GO:0015698 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 | EnsemblPlantsGene:GSBRNA2T00033385001 | InterPro:IPR023614 |
| PFAM:PF01459 | ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF27 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 |
| InterPro:Porin_dom_sf | UniParc:UPI0004EF06A4 | SEG:seg | : | : | : |
Description
BnaC09g32780DBnaC09g32780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKI3]
Coordinates
chrLK032182:+:365526..368299
Molecular Weight (calculated)
37377.1 Da
IEP (calculated)
9.702
GRAVY (calculated)
-0.038
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFVPLPFKG VGEVGLVLPP PPFCEFLGAF CYCLLQGGGG SRRRRRLIQS STQRSCLSSD LEAFVDSLRP SVFQFQHRFN SFASLLFYIR RWEAVQLHFQ
101: ILARNPKDYI FDQRFTLTML SATGTEWVAT GLKKDDFFFG DISTLFKGQN TIVDLKIDGH SSVSTKVTIK NLMPSAKVVI SFKIPYHKSG KLDVQYVHPH
201: ATLHYRSQTI CLGGEVGFDT ASSLLTKYNA GIGFNKPDFF AALMLATYVH KVNPTTSVGA ELIRHFSSHD NSFTIGSSYS LDPFTTVKAR LSNNGKAGMV
301: VQSEWRPKSL VTLSDEYDSK AVTCSPELGL VLALKP
101: ILARNPKDYI FDQRFTLTML SATGTEWVAT GLKKDDFFFG DISTLFKGQN TIVDLKIDGH SSVSTKVTIK NLMPSAKVVI SFKIPYHKSG KLDVQYVHPH
201: ATLHYRSQTI CLGGEVGFDT ASSLLTKYNA GIGFNKPDFF AALMLATYVH KVNPTTSVGA ELIRHFSSHD NSFTIGSSYS LDPFTTVKAR LSNNGKAGMV
301: VQSEWRPKSL VTLSDEYDSK AVTCSPELGL VLALKP
001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP
Arabidopsis Description
VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.