Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006817.1-P | Field mustard | cytosol | 99.27 | 99.27 |
| CDY11866 | Canola | cytosol | 99.27 | 99.27 |
| AT5G57490.1 | Thale cress | cytosol | 89.05 | 89.05 |
| CDY38301 | Canola | cytosol | 42.7 | 70.48 |
| VIT_11s0052g01030.t01 | Wine grape | cytosol | 67.88 | 67.15 |
| Solyc07g008350.2.1 | Tomato | cytosol, plastid | 62.77 | 62.32 |
| KRH02881 | Soybean | mitochondrion | 62.04 | 61.37 |
| CDY25906 | Canola | plasma membrane | 74.82 | 61.01 |
| KRH19015 | Soybean | cytosol | 61.68 | 61.01 |
| Os03t0137500-01 | Rice | mitochondrion | 55.84 | 55.43 |
| EER95548 | Sorghum | cytosol, mitochondrion | 53.28 | 52.9 |
| TraesCS5A01G505700.1 | Wheat | nucleus | 52.55 | 52.55 |
| GSMUA_Achr8P14200_001 | Banana | extracellular, plasma membrane | 57.3 | 52.51 |
| TraesCS4D01G331900.1 | Wheat | nucleus | 52.19 | 52.19 |
| TraesCS4B01G336100.1 | Wheat | nucleus | 51.82 | 51.82 |
| CDY59666 | Canola | cytosol | 14.96 | 50.62 |
| Zm00001d027580_P001 | Maize | mitochondrion | 52.19 | 50.53 |
| CDY69321 | Canola | cytosol | 47.81 | 47.46 |
| CDY59668 | Canola | cytosol | 47.81 | 47.46 |
| CDY43581 | Canola | mitochondrion | 10.95 | 46.88 |
| CDY63765 | Canola | cytosol | 47.08 | 46.74 |
| CDY18662 | Canola | cytosol | 46.35 | 46.01 |
| Zm00001d027578_P001 | Maize | peroxisome | 42.7 | 45.88 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 45.99 | 45.65 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 45.62 | 45.29 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 45.62 | 45.29 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 44.89 | 44.57 |
| CDY68122 | Canola | cytosol | 44.16 | 43.84 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 43.8 | 43.48 |
| CDY28690 | Canola | cytosol | 43.8 | 43.48 |
| CDX91952 | Canola | mitochondrion | 41.97 | 41.67 |
| CDX74294 | Canola | cytosol, mitochondrion | 41.97 | 41.67 |
| Zm00001d048362_P002 | Maize | endoplasmic reticulum, plasma membrane | 50.37 | 37.2 |
| CDY70638 | Canola | cytosol, mitochondrion | 33.58 | 36.8 |
| CDY23028 | Canola | mitochondrion | 26.28 | 33.33 |
| CDY39954 | Canola | extracellular | 13.14 | 16.98 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 21.9 | 16.62 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078DHF0 | EnsemblPlants:CDX88625 | ProteinID:CDX88625 | ProteinID:CDX88625.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008308 | GO:GO:0016020 |
| GO:GO:0055085 | GO:GO:0098656 | EnsemblPlantsGene:GSBRNA2T00148662001 | InterPro:IPR023614 | PFAM:PF01459 | ScanProsite:PS00558 |
| PANTHER:PTHR11743 | PANTHER:PTHR11743:SF27 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniParc:UPI0004EEFCCB |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g10240D
Coordinates
chrLK031856:-:229967..232551
Molecular Weight (calculated)
29442.0 Da
IEP (calculated)
9.763
GRAVY (calculated)
-0.176
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSPAPFPD IGRKAKDLLN KDYIFDQKFT LTMLSATGTE FVATGLQKDD LFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTVKNLMPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQTV SLGGEVGFDT ASSSLTKYNA GISFNKPDFS AALMLEDKGE SLRATYVHTV NPTTSVGAEL
201: IRRFTNHANS FTIGSSYSVD PFTTVKTRLS NNGKAGMVVQ REWRPKSLIT LSAEYDSKAV NSSPKVGLAL ALKP
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQTV SLGGEVGFDT ASSSLTKYNA GISFNKPDFS AALMLEDKGE SLRATYVHTV NPTTSVGAEL
201: IRRFTNHANS FTIGSSYSVD PFTTVKTRLS NNGKAGMVVQ REWRPKSLIT LSAEYDSKAV NSSPKVGLAL ALKP
001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP
Arabidopsis Description
VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.