CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027580_P001	Maize	mitochondrion	95.65	93.29
Zm00001d027578_P001	Maize	peroxisome	78.99	85.49
Os03t0137500-01	Rice	mitochondrion	83.7	83.7
TraesCS5A01G505700.1	Wheat	nucleus	77.9	78.47
TraesCS4B01G336100.1	Wheat	nucleus	77.54	78.1
TraesCS4D01G331900.1	Wheat	nucleus	77.17	77.74
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	89.86	66.85
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	64.13	59.2
KRH02881	Soybean	mitochondrion	56.88	56.68
KRH19015	Soybean	cytosol	56.88	56.68
VIT_11s0052g01030.t01	Wine grape	cytosol	56.52	56.32
CDY11866	Canola	cytosol	53.26	53.65
CDX88625	Canola	cytosol	52.9	53.28
Solyc07g008350.2.1	Tomato	cytosol, plastid	53.26	53.26
AT5G57490.1	Thale cress	cytosol	52.17	52.55
Bra006817.1-P	Field mustard	cytosol	52.17	52.55
EER96631	Sorghum	cytosol	48.19	48.19
Bra002725.1-P	Field mustard	cytosol	26.09	45.28
EES18574	Sorghum	cytosol	43.12	43.12
EES03523	Sorghum	cytosol	42.75	42.6
EES03185	Sorghum	cytosol	42.03	42.18
EER92681	Sorghum	mitochondrion	42.03	42.18
CDY38301	Canola	cytosol	23.91	39.76
CDY25906	Canola	plasma membrane	43.84	36.01

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:8057401	UniProt:C5WYZ2	EnsemblPlants:EER95548	ProteinID:EER95548
ProteinID:EER95548.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0015698	GO:GO:0016020
GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF27
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	EnsemblPlantsGene:SORBI_3001G512300	unigene:Sbi.9609	UniParc:UPI0001A83146	RefSeq:XP_002468550.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:78006104..78009551

Molecular Weight (calculated)

29607.1 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.171

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPVPFVN IGKRAKDLLY KDYNFDQKFS LSTSSSSGLN LTATGVKINE DFIGVIRTQH KSGRTTVDVI IDSDSKVSTT VTVDEALTGL KTSFAFKVPD
101: HKSGKLDLQY AHNRFSLNST IGLTSTPLVE LAATVGTSEL TIGAEVGFDS TSAAVTKYNS GIGYNKSDFS ASLLLADKGE TLKASYIHLF NPTNGATVAA
201: EVTHKFKTKE NYFTVGSSHA LDPSTLLKTR FSNSGKVGLL CQHEWRPKSL VTLSAEYDPK VVSAPSRIGV AISLKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.