CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044318_P001	Maize	cytosol, mitochondrion	93.45	93.45
Os01t0588200-01	Rice	mitochondrion, plasma membrane	90.18	90.18
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	89.82	89.82
TraesCS3D01G213400.1	Wheat	cytosol	89.45	89.45
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	89.09	89.09
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	88.73	88.73
Zm00001d011242_P002	Maize	cytosol	93.09	84.49
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	71.64	71.64
GSMUA_Achr7P00060_001	Banana	cytosol	70.91	70.91
GSMUA_Achr3P20500_001	Banana	cytosol	67.27	67.27
EER96631	Sorghum	cytosol	66.91	66.67
EES18574	Sorghum	cytosol	65.45	65.22
EES03523	Sorghum	cytosol	61.82	61.37
EER92681	Sorghum	mitochondrion	42.18	42.18
EER95548	Sorghum	cytosol, mitochondrion	42.18	42.03
KRH56957	Soybean	cytosol	35.27	39.59
KRH03426	Soybean	cytosol	34.91	39.18
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	35.64	37.98
PGSC0003DMT400065213	Potato	cytosol	32.36	37.24
Solyc03g113210.2.1	Tomato	cytosol	31.64	36.86
KRH63406	Soybean	cytosol	33.09	36.69
KRH54504	Soybean	cytosol	32.0	35.48
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.09	28.83
CDY01000	Canola	endoplasmic reticulum, plasma membrane	27.27	20.78
CDY39954	Canola	extracellular	16.0	20.75

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:8082455	UniProt:C5XPG8	EnsemblPlants:EES03185	ProteinID:EES03185
ProteinID:EES03185.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF33	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:SORBI_3003G201500	unigene:Sbi.14972	UniParc:UPI0001A84E3C	RefSeq:XP_002458065.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:53032278..53034574

Molecular Weight (calculated)

29780.4 Da

IEP (calculated)

8.861

GRAVY (calculated)

-0.208

Length

275 amino acids

Sequence
(BLAST)

001: MAPGLYTDIG KKTRDLLYKD YNTHQKFSLT TCSPHGVAIT AAGTRKNESI FGELHTQIKN KKLTVDIKAN SESDLLTTIT VDELGTPGLK SILSLVVPDQ
101: RSGKFELQYL HEYAGVNASI GLNPNPMVNI SGVFGSKALS VGVDVSFDTA TSNFTKYNAA LSLTSPDLIA SLHLNNHGDT LVGSYYHLVK HHSGTAVGAE
201: LSHSISRNES TLIFGSQHSL DPHTTVKARF NNYGMASALV QHEWRPKSFI TISGEVDTKA IEKSTKVGLS LVLKH

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.