Factsheet for HORVU3Hr1G051010.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	98.91	98.91
TraesCS3D01G213400.1	Wheat	cytosol	98.55	98.55
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	98.18	98.18
Os01t0588200-01	Rice	mitochondrion, plasma membrane	90.91	90.91
EES03185	Sorghum	cytosol	88.73	88.73
Zm00001d044318_P001	Maize	cytosol, mitochondrion	85.82	85.82
Zm00001d011242_P002	Maize	cytosol	87.27	79.21
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	71.64	71.64
GSMUA_Achr7P00060_001	Banana	cytosol	69.82	69.82
GSMUA_Achr3P20500_001	Banana	cytosol	67.27	67.27
HORVU3Hr1G013220.1	Barley	cytosol	22.18	60.4
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	21.82	59.41
HORVU1Hr1G080370.2	Barley	plastid	60.36	50.3
HORVU4Hr1G070150.3	Barley	plasma membrane	44.73	44.4
HORVU3Hr1G067610.2	Barley	mitochondrion	53.09	42.07
PGSC0003DMT400065213	Potato	cytosol	33.09	38.08
KRH03426	Soybean	cytosol	33.82	37.96
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	35.27	37.6
KRH56957	Soybean	cytosol	33.45	37.55
Solyc03g113210.2.1	Tomato	cytosol	32.0	37.29
KRH63406	Soybean	cytosol	30.55	33.87
KRH54504	Soybean	cytosol	29.45	32.66
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.45	29.45
CDY39954	Canola	extracellular	16.73	21.7
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.18	19.94
HORVU7Hr1G034770.11	Barley	plastid	31.64	12.63

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:AK357250	EMBL:AK368286	UniProt:F2D043	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020
GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:HORVU3Hr1G051010	EnsemblPlants:HORVU3Hr1G051010.2	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF33	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
UniParc:UPI000200562E	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D043]

Coordinates

chrchr3H:-:367113992..367116375

Molecular Weight (calculated)

29884.4 Da

IEP (calculated)

7.364

GRAVY (calculated)

-0.195

Length

275 amino acids

Sequence
(BLAST)

001: MAPGLYTDIG KKTRDLLYRD YCTHQKFTLT TCTPEGVAIT AAGTRKNESI FGELQTQLKN KNLTVDIKAN SESDLLTTFT VDEFATPGLK SILSLVVPDQ
101: RSGKLELQYL HEFASVNASV GLNPSPMVNL SGVFGSKELS VGVDVSFDTA TSNFTKYNAA LSLAYPDLIA SLHLNNHGDT LTASYYHLVK SHSSTAVGAE
201: LSHNFPRNES TLIFGSQHSL DPHTSVKARF NNYGMASALV QHEWRPKSLV TISGEVDTKA IEKSTKVGLS LVLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.