Factsheet for VIT_17s0000g05690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	45.35	42.55
PGSC0003DMT400065213	Potato	cytosol	39.15	42.26
VIT_01s0026g01650.t01	Wine grape	cytosol	44.96	42.03
KRH56957	Soybean	cytosol	39.53	41.63
Solyc03g113210.2.1	Tomato	cytosol	37.98	41.53
GSMUA_Achr7P00060_001	Banana	cytosol	44.19	41.45
KRH03426	Soybean	cytosol	39.15	41.22
VIT_14s0108g00010.t01	Wine grape	cytosol	43.41	40.58
GSMUA_Achr3P20500_001	Banana	cytosol	41.86	39.27
GSMUA_Achr7P08830_001	Banana	cytosol	41.86	39.27
KRH63406	Soybean	cytosol	37.6	39.11
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	31.4	38.76
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	15.12	38.61
HORVU3Hr1G013220.1	Barley	cytosol	15.12	38.61
KRH54504	Soybean	cytosol	36.82	38.31
GSMUA_Achr6P04840_001	Banana	cytosol	40.31	38.1
TraesCS5A01G193700.1	Wheat	golgi, unclear	40.31	37.82
TraesCS5B01G189000.1	Wheat	mitochondrion	39.92	37.45
TraesCS5D01G196100.1	Wheat	mitochondrion	39.92	37.45
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	38.76	36.36
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	38.37	36.0
TraesCS3D01G213400.1	Wheat	cytosol	38.37	36.0
EES03185	Sorghum	cytosol	37.98	35.64
Os01t0588200-01	Rice	mitochondrion, plasma membrane	37.98	35.64
Zm00001d044318_P001	Maize	cytosol, mitochondrion	37.6	35.27
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	37.6	35.27
Zm00001d020219_P004	Maize	cytosol	37.6	35.14
Os05t0536200-01	Rice	mitochondrion	37.6	34.64
Zm00001d038840_P001	Maize	mitochondrion	36.43	34.06
EER96631	Sorghum	cytosol	36.43	34.06
TraesCS1B01G374200.1	Wheat	golgi, unclear	37.98	34.03
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	36.05	33.57
TraesCS1D01G361900.1	Wheat	golgi	37.21	33.33
EES18574	Sorghum	cytosol	35.66	33.33
EES03523	Sorghum	cytosol	34.88	32.49
Zm00001d011242_P002	Maize	cytosol	36.82	31.35
VIT_11s0052g01030.t01	Wine grape	cytosol	32.95	30.69
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	33.33	30.07
VIT_18s0001g09120.t01	Wine grape	mitochondrion	9.69	29.76
VIT_07s0129g00170.t01	Wine grape	cytosol	31.78	29.71
Zm00001d043661_P001	Maize	cytosol	31.78	29.6
HORVU1Hr1G080370.2	Barley	plastid	37.6	29.39
TraesCS3D01G247900.1	Wheat	cytosol	33.72	27.02
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	16.67	26.38
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	32.17	25.08
Zm00001d005649_P001	Maize	cytosol	10.08	24.07
HORVU3Hr1G067610.2	Barley	mitochondrion	32.17	23.92
TraesCS7D01G167200.1	Wheat	mitochondrion	24.42	23.16
VIT_07s0129g00100.t01	Wine grape	cytosol	8.53	19.3
CDY39954	Canola	extracellular	15.12	18.4
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.19	18.01
TraesCS7A01G166600.1	Wheat	cytosol	28.68	14.34
HORVU7Hr1G034770.11	Barley	plastid	27.13	10.16

Protein Annotations

EntrezGene:100245018	wikigene:100245018	Gene3D:2.40.160.10	MapMan:24.4.1	ProteinID:CBI15271	ProteinID:CBI15271.3
UniProt:D7SIG0	EMBL:FN594950	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023614	EntrezGene:LOC100245018	wikigene:LOC100245018	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF35
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0001BE0B83	ArrayExpress:VIT_17s0000g05690	EnsemblPlantsGene:VIT_17s0000g05690	EnsemblPlants:VIT_17s0000g05690.t01
RefSeq:XP_003634314	RefSeq:XP_003634314.1	RefSeq:XP_003634314.2	RefSeq:XP_003634315	RefSeq:XP_003634315.1	SEG:seg

Description

No Description!

Coordinates

chr17:-:6167654..6170135

Molecular Weight (calculated)

28076.6 Da

IEP (calculated)

6.391

GRAVY (calculated)

0.021

Length

258 amino acids

Sequence
(BLAST)

001: MAYRPSFYLE IGRKARDLLY RDYTEQPPMH YHYGCCDWSY DLALRSQICR STSHEINDNN QELVGEHVPG ISAVLRFIVP DPLSSKVELR YLRDFLGITA
101: GIEGMTTNPV MSFSGVIGSS VVSLGTDLAF DTILKNFTKC NAGLSFSSPI VSASLTLEDK GDTAKASCFG LINPLTSTAI AAELKHTFSQ NETSLTLGAQ
201: HEVAPLTVIK ARADTTGKVG ALFQHQLVSK IFLTLAGDVD IQELKTSPTI GLSLALRP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.