Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002261 | Potato | mitochondrion | 84.78 | 84.78 |
| Solyc01g010760.2.1 | Tomato | plastid | 84.06 | 84.06 |
| VIT_14s0108g00010.t01 | Wine grape | cytosol | 78.62 | 78.62 |
| KRH45848 | Soybean | mitochondrion | 77.17 | 77.17 |
| KRG99160 | Soybean | mitochondrion | 76.81 | 76.81 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 23.19 | 56.14 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 51.45 | 51.45 |
| VIT_11s0052g01030.t01 | Wine grape | cytosol | 49.64 | 49.46 |
| VIT_17s0000g05690.t01 | Wine grape | cytosol, mitochondrion | 42.03 | 44.96 |
| VIT_18s0001g09120.t01 | Wine grape | mitochondrion | 12.68 | 41.67 |
Protein Annotations
| EntrezGene:100248362 | wikigene:100248362 | Gene3D:2.40.160.10 | MapMan:24.4.1 | ProteinID:CCB56580 | ProteinID:CCB56580.1 |
| UniProt:F6HPF2 | EMBL:FN596002 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023614 | EntrezGene:LOC100248362 | wikigene:LOC100248362 | PFAM:PF01459 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF31 |
| InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | TIGR:TC62070 | UniParc:UPI00015CA2F6 | ArrayExpress:VIT_01s0026g01650 | EnsemblPlantsGene:VIT_01s0026g01650 |
| EnsemblPlants:VIT_01s0026g01650.t01 | unigene:Vvi.3209 | RefSeq:XP_002276636 | RefSeq:XP_002276636.1 | : | : |
Description
No Description!
Coordinates
chr1:-:10815279..10818995
Molecular Weight (calculated)
29427.7 Da
IEP (calculated)
7.657
GRAVY (calculated)
-0.154
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGPGLYSD IGKIARDLLY RDYQSDHKFT VTTYTSSGVA ITSSGTKKGE LFIADVNTQL KNKNITTDVK VDTNSNLFTT ITVDEPAPGL KTIFSFIIPD
101: QRSGKVELQY LHEYAGISTS IGLTANPIVN FSGVVGNNTL SLGTDLSFDT ATGNFTKCNA GLGFSNADLI AALTLNDKGD TLNASYYHTV SPLTNTAVGA
201: ELSHCFSTNE NTLTIGTQHA LDPLTKVKAR ANNSGKVSAL IQHEWRPKSL FTISGEVDAR AVEKSAKIGL ALALKP
101: QRSGKVELQY LHEYAGISTS IGLTANPIVN FSGVVGNNTL SLGTDLSFDT ATGNFTKCNA GLGFSNADLI AALTLNDKGD TLNASYYHTV SPLTNTAVGA
201: ELSHCFSTNE NTLTIGTQHA LDPLTKVKAR ANNSGKVSAL IQHEWRPKSL FTISGEVDAR AVEKSAKIGL ALALKP
001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
Arabidopsis Description
VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.