Factsheet for VIT_07s0129g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00100.t01	Wine grape	cytosol	39.13	94.74
Bra031839.1-P	Field mustard	mitochondrion	18.48	79.69
CDY43581	Canola	mitochondrion	18.48	79.69
PGSC0003DMT400055247	Potato	cytosol	79.35	79.35
PGSC0003DMT400023484	Potato	cytosol	78.62	79.2
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	78.99	78.99
KRH28358	Soybean	mitochondrion	78.62	78.62
Solyc02g092440.2.1	Tomato	plastid	78.26	78.26
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	77.17	77.74
CDY18662	Canola	cytosol	73.55	73.55
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	73.19	73.19
CDY36497	Canola	cytosol, nucleus, plastid	72.83	72.83
CDX81312	Canola	cytosol, mitochondrion, nucleus	72.83	72.83
CDY08723	Canola	cytosol, nucleus, plastid	72.46	72.46
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	72.1	72.1
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	69.93	69.93
GSMUA_AchrUn_...	Banana	cytosol	69.57	69.82
CDY02103	Canola	cytosol, mitochondrion, nucleus	68.48	68.48
GSMUA_Achr7P26190_001	Banana	cytosol	66.3	66.55
TraesCS4D01G258900.1	Wheat	cytosol	65.94	66.18
GSMUA_Achr5P08710_001	Banana	cytosol	65.58	65.82
TraesCS4A01G046000.1	Wheat	plastid	65.94	65.7
HORVU4Hr1G070150.3	Barley	plasma membrane	65.94	65.7
TraesCS4B01G259600.1	Wheat	cytosol	65.94	65.7
AT3G49920.1	Thale cress	cytosol	53.62	65.49
EER92681	Sorghum	mitochondrion	64.49	64.73
Zm00001d048149_P002	Maize	mitochondrion	63.77	64.0
Zm00001d028102_P001	Maize	mitochondrion	63.41	63.64
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	70.29	63.61
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	63.04	62.82
VIT_14s0108g00010.t01	Wine grape	cytosol	51.81	51.81
VIT_01s0026g01650.t01	Wine grape	cytosol	51.45	51.45
VIT_18s0001g09120.t01	Wine grape	mitochondrion	14.13	46.43
CDY23028	Canola	mitochondrion	36.23	46.3
VIT_11s0052g01030.t01	Wine grape	cytosol	45.29	45.13
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	29.71	31.78

Protein Annotations

EntrezGene:100266220	wikigene:100266220	EntrezGene:100854200	wikigene:100854200	Gene3D:2.40.160.10	MapMan:24.4.1
UniProt:A5AQ65	EMBL:AM431974	ProteinID:CAN75907	ProteinID:CAN75907.1	ProteinID:CBI33694	ProteinID:CBI33694.3
EMBL:FN596246	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	EntrezGene:LOC100266220
wikigene:LOC100266220	EntrezGene:LOC100854200	wikigene:LOC100854200	PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743
PANTHER:PTHR11743:SF29	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	SUPFAM:SSF56935	TIGR:TC52825
UniParc:UPI000151F413	ArrayExpress:VIT_07s0129g00170	EnsemblPlantsGene:VIT_07s0129g00170	EnsemblPlants:VIT_07s0129g00170.t01	unigene:Vvi.7041	RefSeq:XP_002279650
RefSeq:XP_002279650.2	RefSeq:XP_003632501	RefSeq:XP_003632501.1	:	:	:

Description

No Description!

Coordinates

chr7:-:15426943..15432003

Molecular Weight (calculated)

29291.6 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.138

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPGLFAD IGKKAKDLLT RDYISDQKFT VSTYSDTGVA ITSTAVKKGG LSTGDVAVQY KYKNSVIDVK ADTGSNINTT LTFTEIIPST KTIASFKFPD
101: YNSGKLEVQY FHDHATLTTS VALNQSPAVD LSVTIGTPSI AFGAEAGYDT TSGCFTKYTA GISVAKPDSC ASIILGDKGD TIRASYVHHL DSLKKSAAVG
201: EISRRFSTND NTFTVGGSYA IDPLTNVKAK LNNHGNLGAL LQHEIIPKSI LTLSGEFDTK ALDKTPRFGL ALALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.