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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, plasma membrane, mitochondrion

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 18260611
mitochondrion: 19010998
nucleus: 19621931
plastid: 21433289
mitochondrion: 23027867
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER92681 Sorghum mitochondrion 86.64 87.27
Zm00001d048149_P002 Maize mitochondrion 85.2 85.82
Zm00001d028102_P001 Maize mitochondrion 85.2 85.82
HORVU4Hr1G070150.3 Barley plasma membrane 82.67 82.67
TraesCS4A01G046000.1 Wheat plastid 82.31 82.31
TraesCS4B01G259600.1 Wheat cytosol 82.31 82.31
TraesCS4D01G258900.1 Wheat cytosol 81.23 81.82
GSMUA_Achr7P26190_001 Banana cytosol 72.92 73.45
GSMUA_AchrUn_... Banana cytosol 70.76 71.27
GSMUA_Achr5P08710_001 Banana cytosol 68.95 69.45
CDY43581 Canola mitochondrion 15.88 68.75
Bra031839.1-P Field mustard mitochondrion 15.52 67.19
PGSC0003DMT400055247 Potato cytosol 64.98 65.22
KRH77123 Soybean endoplasmic reticulum, mitochondrion 64.98 65.22
Solyc02g092440.2.1 Tomato plastid 64.62 64.86
KRH28358 Soybean mitochondrion 64.62 64.86
PGSC0003DMT400023484 Potato cytosol 63.9 64.6
Solyc03g044010.2.1 Tomato cytosol, nucleus, unclear 63.54 64.23
VIT_07s0129g00100.t01 Wine grape cytosol 26.35 64.04
VIT_07s0129g00170.t01 Wine grape cytosol 62.82 63.04
Bra037844.1-P Field mustard cytosol, mitochondrion, nucleus 57.76 57.97
CDY18662 Canola cytosol 57.76 57.97
CDY08723 Canola cytosol, nucleus, plastid 57.4 57.61
CDX81312 Canola cytosol, mitochondrion, nucleus 57.4 57.61
Bra024444.1-P Field mustard cytosol, nucleus, plastid 57.04 57.25
CDY36497 Canola cytosol, nucleus, plastid 57.04 57.25
Bra012915.1-P Field mustard cytosol, mitochondrion, nucleus 55.6 55.8
CDY02103 Canola cytosol, mitochondrion, nucleus 54.87 55.07
KRH05595 Soybean plastid 49.46 54.58
KRH15450 Soybean cytosol 54.51 54.51
AT3G49920.1 Thale cress cytosol 44.4 54.42
AT5G67500.1 Thale cress cytosol, mitochondrion, nucleus 55.23 50.16
Os05t0536200-01 Rice mitochondrion 44.4 43.93
Os03t0137500-01 Rice mitochondrion 42.96 43.12
VIT_18s0001g09120.t01 Wine grape mitochondrion 13.0 42.86
Os01t0588200-01 Rice mitochondrion, plasma membrane 41.52 41.82
Os01t0715500-00 Rice cytosol, mitochondrion, plasma membrane 30.32 40.19
CDY23028 Canola mitochondrion 27.8 35.65
Protein Annotations
Gene3D:2.40.160.10MapMan:24.4.1EntrezGene:4331978ProteinID:ABF94513.1ProteinID:ABF94514.1EMBL:AK121020
EMBL:AY224468ProteinID:BAF11215.1ProteinID:BAS82832.1ProteinID:EEE58526.1GO:GO:0003674GO:GO:0003676
GO:GO:0005215GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005741GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008308
GO:GO:0015288GO:GO:0015698GO:GO:0016020GO:GO:0016021GO:GO:0046930GO:GO:0055085
GO:GO:0098656InterPro:IPR023614EnsemblPlantsGene:Os03g0202200EnsemblPlants:Os03t0202200-01PFAM:PF01459ScanProsite:PS00558
PANTHER:PTHR11743PANTHER:PTHR11743:SF29InterPro:Porin_EukInterPro:Porin_Euk/Tom40InterPro:Porin_dom_sfUniProt:Q84P97
UniParc:UPI000005F8C5RefSeq:XP_015632717.1SEG:seg:::
Description
voltage-dependent anion-selective channel 4, voltage-dependent anion channel 5Porin-like protein. (Os03t0202200-01)
Coordinates
chr3:-:5348313..5351951
Molecular Weight (calculated)
29476.2 Da
IEP (calculated)
9.687
GRAVY (calculated)
-0.138
Length
277 amino acids
Sequence
(BLAST)
001: MAMKGPGLFS DIGKRAKDLL TKDYTYDQKL TVSTVSSSGV GLTSTAVKKG GLYTLDVSSV YKYKSTLVDV KVDTESNIST TLTVFDVLPS TKLVTSVKLP
101: DYNSGKVEMQ YFHENASFAT AVGMKPSPVV EFSGTAGAQG LAFGAEAGFD TATGKFTKYS AAIGVTKPDY HAAIVLADKG DTVKVSGVYH LDDKQKSSVV
201: AELTRRLSTN ENTLTVGGLY KVDPETAVKA RLNNTGKLAA LLQHEVKPKS VLTISGEFDT KALDRPPKFG LALALRP
Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [cytosol,nucleus,mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.