Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G259600.1 | Wheat | cytosol | 99.64 | 98.92 |
| TraesCS4A01G046000.1 | Wheat | plastid | 99.64 | 98.92 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 97.45 | 96.75 |
| Zm00001d048149_P002 | Maize | mitochondrion | 81.82 | 81.82 |
| EER92681 | Sorghum | mitochondrion | 81.45 | 81.45 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 81.82 | 81.23 |
| Zm00001d028102_P001 | Maize | mitochondrion | 81.09 | 81.09 |
| Bra031839.1-P | Field mustard | mitochondrion | 16.73 | 71.88 |
| CDY43581 | Canola | mitochondrion | 16.36 | 70.31 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 69.09 | 69.09 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.73 | 68.73 |
| KRH28358 | Soybean | mitochondrion | 67.64 | 67.39 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 67.64 | 67.39 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 67.27 | 67.27 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 27.64 | 66.67 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 66.18 | 65.94 |
| PGSC0003DMT400055247 | Potato | cytosol | 65.82 | 65.58 |
| Solyc02g092440.2.1 | Tomato | plastid | 65.09 | 64.86 |
| PGSC0003DMT400023484 | Potato | cytosol | 64.0 | 64.23 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 63.64 | 63.87 |
| CDY18662 | Canola | cytosol | 64.0 | 63.77 |
| Bra037844.1-P | Field mustard | cytosol, mitochondrion, nucleus | 63.64 | 63.41 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 63.27 | 63.04 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 62.91 | 62.68 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 62.55 | 62.32 |
| Bra024444.1-P | Field mustard | cytosol, nucleus, plastid | 62.55 | 62.32 |
| Bra012915.1-P | Field mustard | cytosol, mitochondrion, nucleus | 61.09 | 60.87 |
| AT3G49920.1 | Thale cress | cytosol | 49.82 | 60.62 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 60.0 | 59.78 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 61.09 | 55.08 |
| KRH15450 | Soybean | cytosol | 54.18 | 53.79 |
| KRH05595 | Soybean | plastid | 48.0 | 52.59 |
| TraesCS5D01G196100.1 | Wheat | mitochondrion | 45.82 | 45.82 |
| TraesCS3D01G213400.1 | Wheat | cytosol | 43.64 | 43.64 |
| TraesCS1D01G361900.1 | Wheat | golgi | 45.45 | 43.4 |
| TraesCS4D01G331900.1 | Wheat | nucleus | 40.36 | 40.51 |
| VIT_18s0001g09120.t01 | Wine grape | mitochondrion | 12.36 | 40.48 |
| CDY23028 | Canola | mitochondrion | 30.18 | 38.43 |
| TraesCS3D01G247900.1 | Wheat | cytosol | 40.36 | 34.47 |
| TraesCS7D01G167200.1 | Wheat | mitochondrion | 26.55 | 26.84 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008308 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 | InterPro:IPR023614 | PFAM:PF01459 |
| ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF29 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| EnsemblPlantsGene:TraesCS4D01G258900 | EnsemblPlants:TraesCS4D01G258900.1 | TIGR:cd07306 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4D:+:428579202..428582359
Molecular Weight (calculated)
29256.9 Da
IEP (calculated)
9.799
GRAVY (calculated)
-0.134
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGPGLFTDI GKKAKDLLTR DYTYDQKLSV STVSSSGVAV TSTAVKKGGL YSLDVASAYK YKNNLVDVKV DTESNISTTL TVLDVLPSTK LVTSIKFPDY
101: NAGKVEVQYF HDHATFAAAV GMKPSPVVDF SLVVGPKGLA FGGEAGFDTS SGKFTKYTGG FSVTKPDFHA SAILADKGDT IKVSGVYHLD EKQKASAVAE
201: FTRKLSTNEN TLTVGGLYTV DPQTAVKARL NNTGKLAALL QHEVKPKSLL TISGEFDTKA LDRAPKFGLS LALKP
101: NAGKVEVQYF HDHATFAAAV GMKPSPVVDF SLVVGPKGLA FGGEAGFDTS SGKFTKYTGG FSVTKPDFHA SAILADKGDT IKVSGVYHLD EKQKASAVAE
201: FTRKLSTNEN TLTVGGLYTV DPQTAVKARL NNTGKLAALL QHEVKPKSLL TISGEFDTKA LDRAPKFGLS LALKP
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.