CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05595	Soybean	plastid	77.26	85.26
KRH28358	Soybean	mitochondrion	59.57	59.78
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	58.84	59.06
Zm00001d028102_P001	Maize	mitochondrion	55.6	56.0
EER92681	Sorghum	mitochondrion	55.23	55.64
GSMUA_AchrUn_...	Banana	cytosol	55.23	55.64
Zm00001d048149_P002	Maize	mitochondrion	54.51	54.91
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	54.51	54.51
GSMUA_Achr7P26190_001	Banana	cytosol	53.79	54.18
TraesCS4D01G258900.1	Wheat	cytosol	53.79	54.18
TraesCS4B01G259600.1	Wheat	cytosol	53.79	53.79
TraesCS4A01G046000.1	Wheat	plastid	53.79	53.79
HORVU4Hr1G070150.3	Barley	plasma membrane	53.43	53.43
GSMUA_Achr5P08710_001	Banana	cytosol	51.62	52.0
KRH18503	Soybean	mitochondrion	46.21	46.38
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	45.49	45.65
KRH40133	Soybean	mitochondrion	45.13	45.29
KRH01127	Soybean	mitochondrion	44.77	44.93
KRG99160	Soybean	mitochondrion	42.6	42.75
KRH45848	Soybean	mitochondrion	42.6	42.75
VIT_18s0001g09120.t01	Wine grape	mitochondrion	12.64	41.67
KRH02881	Soybean	mitochondrion	40.07	40.07
KRH19015	Soybean	cytosol	39.71	39.71
KRH63406	Soybean	cytosol	26.35	29.44
KRH56957	Soybean	cytosol	25.99	29.39
KRH03426	Soybean	cytosol	25.63	28.98
KRH54504	Soybean	cytosol	24.55	27.42

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:ACUP02008598	EnsemblPlantsGene:GLYMA_14G088800	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085
GO:GO:0098656	UniProt:I1J462	InterPro:IPR023614	EnsemblPlants:KRH15450	ProteinID:KRH15450	ProteinID:KRH15450.1
PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF32	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniParc:UPI0001BA913A	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:8001434..8004632

Molecular Weight (calculated)

29879.6 Da

IEP (calculated)

9.726

GRAVY (calculated)

-0.191

Length

277 amino acids

Sequence
(BLAST)

001: MSGKGPGFFS EIGKRGRDIL TKDYNSDQRF TISSSTNSGL DLKSTLVKSR GLSSGDVAAE FKYKNKAVNV KVDTESNVLT TFTVSDVVPS AKTIASIRLP
101: DYSSGKVEVQ YLHEHVAFTL GVGLDRSPVI DFSGTMGTPS IAFGAETSYS TSVGKFMKYN AGLCLKMPSS NASVILGDKG DSMKVSYLHQ LERLNGGVVV
201: GEISRRFSTN ENTLTVGCSY VVDSQTVLKA KLNNHGNLGA LLQHELTRKS FLTISSAFET KDLDKSPKFG FTLLLKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.