Factsheet for TraesCS4A01G046000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 16595579
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G259600.1	Wheat	cytosol	100.0	100.0
TraesCS4D01G258900.1	Wheat	cytosol	98.92	99.64
HORVU4Hr1G070150.3	Barley	plasma membrane	97.83	97.83
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	82.31	82.31
Zm00001d048149_P002	Maize	mitochondrion	81.59	82.18
EER92681	Sorghum	mitochondrion	81.23	81.82
Zm00001d028102_P001	Maize	mitochondrion	80.87	81.45
Bra031839.1-P	Field mustard	mitochondrion	16.61	71.88
CDY43581	Canola	mitochondrion	16.25	70.31
GSMUA_Achr7P26190_001	Banana	cytosol	68.59	69.09
GSMUA_AchrUn_...	Banana	cytosol	67.87	68.36
KRH28358	Soybean	mitochondrion	67.15	67.39
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	67.15	67.39
GSMUA_Achr5P08710_001	Banana	cytosol	66.43	66.91
VIT_07s0129g00100.t01	Wine grape	cytosol	27.44	66.67
VIT_07s0129g00170.t01	Wine grape	cytosol	65.7	65.94
PGSC0003DMT400055247	Potato	cytosol	65.34	65.58
Solyc02g092440.2.1	Tomato	plastid	64.62	64.86
PGSC0003DMT400023484	Potato	cytosol	63.54	64.23
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	63.18	63.87
CDY18662	Canola	cytosol	63.54	63.77
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	63.18	63.41
CDX81312	Canola	cytosol, mitochondrion, nucleus	62.82	63.04
CDY08723	Canola	cytosol, nucleus, plastid	62.45	62.68
CDY36497	Canola	cytosol, nucleus, plastid	62.09	62.32
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	62.09	62.32
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	60.65	60.87
AT3G49920.1	Thale cress	cytosol	49.46	60.62
CDY02103	Canola	cytosol, mitochondrion, nucleus	59.57	59.78
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	60.65	55.08
KRH15450	Soybean	cytosol	53.79	53.79
KRH05595	Soybean	plastid	47.65	52.59
TraesCS5A01G193700.1	Wheat	golgi, unclear	45.49	45.82
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	42.96	43.27
TraesCS5A01G505700.1	Wheat	nucleus	40.79	41.24
VIT_18s0001g09120.t01	Wine grape	mitochondrion	12.27	40.48
CDY23028	Canola	mitochondrion	29.96	38.43
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	40.43	33.84
TraesCS7A01G166600.1	Wheat	cytosol	31.41	16.86

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:TraesCS4A01G046000	EnsemblPlants:TraesCS4A01G046000.1	TIGR:cd07306	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:-:37813223..37816472

Molecular Weight (calculated)

29445.2 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.121

Length

277 amino acids

Sequence
(BLAST)

001: MAMKGPGLFT DIGKKAKDLL TRDYTYDQKL SVSTVSSSGV AVTSTAVKKG GLYSLDVASA YKYKNNLVDV KVDTESNIST TLTVLDVLPS TKLVTSVKFP
101: DYNAGKVEVQ YFHDHATFAA AVGMKPSPVV DFSLVVGPKG LAFGGEAGFD TSSGKFTKYT GGFSVTKPDF HASAILADKG DTIKVSGVYH LDEKQKASAV
201: AEFTRKLSTN ENTLTVGGLY TVDPQTAVKA RLNNTGKLAA LLQHEVKPKS LLTISGEFDT KALDRAPKFG LSLALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.