Factsheet for TraesCS5A01G193700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G189000.1	Wheat	mitochondrion	99.64	99.64
TraesCS5D01G196100.1	Wheat	mitochondrion	99.27	99.27
EER96631	Sorghum	cytosol	81.45	81.16
Zm00001d005649_P001	Maize	cytosol	31.64	80.56
Zm00001d020219_P004	Maize	cytosol	78.18	77.9
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	75.64	75.64
GSMUA_Achr7P00060_001	Banana	cytosol	74.18	74.18
GSMUA_Achr3P20500_001	Banana	cytosol	73.45	73.45
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	66.91	66.91
TraesCS5A01G505700.1	Wheat	nucleus	46.91	47.08
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.36	46.83
TraesCS4A01G046000.1	Wheat	plastid	45.82	45.49
KRH56957	Soybean	cytosol	37.82	42.45
KRH03426	Soybean	cytosol	37.45	42.04
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	37.82	40.31
PGSC0003DMT400065213	Potato	cytosol	32.36	37.24
KRH63406	Soybean	cytosol	33.09	36.69
Solyc03g113210.2.1	Tomato	cytosol	31.27	36.44
KRH54504	Soybean	cytosol	32.0	35.48
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	18.18	30.67
CDY39954	Canola	extracellular	16.36	21.23
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.18	19.94
TraesCS7A01G166600.1	Wheat	cytosol	34.55	18.41

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:TraesCS5A01G193700	EnsemblPlants:TraesCS5A01G193700.1	TIGR:cd07306	:	:	:

Description

No Description!

Coordinates

chr5A:+:397143683..397146551

Molecular Weight (calculated)

28950.3 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.096

Length

275 amino acids

Sequence
(BLAST)

001: MGGPGLYSGI GKKAKDLLYR DYQTDHKFTL TTYTANGAAI TATSTKKADL ILGEIQSQIK NKNITVDVKA NSASNVITTI TADDLAAPGL KTILSFAVPD
101: QKSGKVELQY LHDYAGINAS IGLTANPVVN LSGAFGTSAL ALGADVSLDT ATKNFTKYNA ALSYTNQDLI ASLNLNNKGD SLTASYYHIV EKSGTAVGAE
201: LTHSFSSNEN SLTFGTQHTL DPLTLVKARI NNSGKASALI QHEFMPKSLC TISAEVDTKA IEKSSKVGIA IALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.