Factsheet for TraesCS5B01G189000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

plastid: 16595579
mitochondrion: 21043471
golgi: 23128297
mitochondrion: 23895732
nucleus: 26228564
plastid: 28542341

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G196100.1	Wheat	mitochondrion	99.64	99.64
TraesCS5A01G193700.1	Wheat	golgi, unclear	99.64	99.64
EER96631	Sorghum	cytosol	81.82	81.52
Zm00001d005649_P001	Maize	cytosol	31.64	80.56
Zm00001d020219_P004	Maize	cytosol	78.55	78.26
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	76.0	76.0
GSMUA_Achr7P00060_001	Banana	cytosol	74.55	74.55
GSMUA_Achr3P20500_001	Banana	cytosol	73.82	73.82
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	67.27	67.27
TraesCS1B01G374200.1	Wheat	golgi, unclear	64.73	61.81
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	57.45	55.24
TraesCS4B01G336100.1	Wheat	nucleus	47.64	47.81
TraesCS4B01G259600.1	Wheat	cytosol	45.82	45.49
KRH56957	Soybean	cytosol	37.45	42.04
KRH03426	Soybean	cytosol	37.09	41.63
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	37.45	39.92
PGSC0003DMT400065213	Potato	cytosol	32.36	37.24
Solyc03g113210.2.1	Tomato	cytosol	31.27	36.44
KRH63406	Soybean	cytosol	32.73	36.29
KRH54504	Soybean	cytosol	31.64	35.08
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	18.18	30.67
CDY39954	Canola	extracellular	16.0	20.75
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.82	19.67

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:TraesCS5B01G189000	EnsemblPlants:TraesCS5B01G189000.1	TIGR:cd07306	:	:	:

Description

No Description!

Coordinates

chr5B:+:341051232..341054266

Molecular Weight (calculated)

28936.3 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.095

Length

275 amino acids

Sequence
(BLAST)

001: MGGPGLYSGI GKKAKDLLYR DYQTDHKFTL TTYTANGAAI TATSTKKADL ILGEIQSQIK NKNITVDVKA NSASNVITTI TADDLAAPGL KTILSFAVPD
101: QKSGKVELQY LHDYAGINAS IGLTANPVVN LSGAFGTSAL AVGADVSLDT ATKNFTKYNA ALSYTNQDLI ASLNLNNKGD SLTASYYHIV EKSGTAVGAE
201: LTHSFSSNEN SLTFGTQHTL DPLTLVKARI NNSGKASALI QHEFMPKSLC TISAEVDTKA IEKSSKVGIA IALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.