CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005649_P001	Maize	cytosol	36.23	92.59
Zm00001d020219_P004	Maize	cytosol	90.94	90.94
TraesCS5D01G196100.1	Wheat	mitochondrion	81.88	82.18
TraesCS5B01G189000.1	Wheat	mitochondrion	81.52	81.82
TraesCS5A01G193700.1	Wheat	golgi, unclear	81.16	81.45
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	75.0	75.27
GSMUA_Achr7P00060_001	Banana	cytosol	73.55	73.82
GSMUA_Achr3P20500_001	Banana	cytosol	72.1	72.36
EES18574	Sorghum	cytosol	68.12	68.12
EES03185	Sorghum	cytosol	66.67	66.91
EES03523	Sorghum	cytosol	62.32	62.09
EER95548	Sorghum	cytosol, mitochondrion	48.19	48.19
EER92681	Sorghum	mitochondrion	45.29	45.45
KRH56957	Soybean	cytosol	36.59	41.22
KRH03426	Soybean	cytosol	36.23	40.82
PGSC0003DMT400065213	Potato	cytosol	32.97	38.08
Solyc03g113210.2.1	Tomato	cytosol	31.52	36.86
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	34.06	36.43
KRH63406	Soybean	cytosol	32.61	36.29
KRH54504	Soybean	cytosol	31.88	35.48
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.39	29.45
CDY39954	Canola	extracellular	15.58	20.28
CDY01000	Canola	endoplasmic reticulum, plasma membrane	24.28	18.56

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:8054614	UniProt:C5XAN7	EnsemblPlants:EER96631	ProteinID:EER96631
ProteinID:EER96631.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:SORBI_3002G180300	unigene:Sbi.18079	UniParc:UPI0001A839ED	RefSeq:XP_002460110.1	:	:

Description

hypothetical protein

Coordinates

chr2:+:56161313..56164881

Molecular Weight (calculated)

29404.8 Da

IEP (calculated)

8.683

GRAVY (calculated)

-0.150

Length

276 amino acids

Sequence
(BLAST)

001: MVGPGLYAEI GKKTKDLLYK DYQTDHKFTL TTYTSNGVAV TASSTKKADL IFGEIQSQIK NKNITVDVKA NSESNIITTV TVDEIATPGL KTILSFAVPD
101: QRSGKVELQY LHDYAGVNAS IGLTANPVVN LSAAFGTKAL AVGADVSLDT ATGNLTKYNS GLRFTHEDLI ASLSLNNRGD SLTGAYYHKV SELTNTAVGA
201: ELTHSFSTNE NTVTFGGQHA LDPLTVLKAR INNSGKASAL IQHEWRPKSL VTISAEVDTK TIEKSSKVGI AVALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.