CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043661_P001	Maize	cytosol	78.34	78.34
EES18574	Sorghum	cytosol	66.79	67.03
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	49.82	66.03
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	63.9	64.36
GSMUA_Achr7P00060_001	Banana	cytosol	63.54	64.0
GSMUA_Achr3P20500_001	Banana	cytosol	62.45	62.91
EER96631	Sorghum	cytosol	62.09	62.32
EES03185	Sorghum	cytosol	61.37	61.82
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	59.93	58.04
TraesCS3D01G247900.1	Wheat	cytosol	61.37	52.8
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	59.57	49.85
HORVU3Hr1G067610.2	Barley	mitochondrion	59.21	47.26
EER95548	Sorghum	cytosol, mitochondrion	42.6	42.75
EER92681	Sorghum	mitochondrion	40.07	40.36
KRH63406	Soybean	cytosol	34.66	38.71
KRH56957	Soybean	cytosol	33.94	38.37
KRH03426	Soybean	cytosol	33.21	37.55
KRH54504	Soybean	cytosol	33.21	37.1
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	32.49	34.88
Solyc03g113210.2.1	Tomato	cytosol	28.16	33.05
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	19.13	32.52
PGSC0003DMT400065213	Potato	cytosol	27.8	32.22
CDY39954	Canola	extracellular	14.44	18.87
CDY01000	Canola	endoplasmic reticulum, plasma membrane	23.47	18.01

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:8059181	UniProt:C5XIA4	EnsemblPlants:EES03523	ProteinID:EES03523
ProteinID:EES03523.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614
PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	EnsemblPlantsGene:SORBI_3003G276500
unigene:Sbi.5751	UniParc:UPI0001A84CF1	RefSeq:XP_002458403.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:61283373..61286419

Molecular Weight (calculated)

29728.2 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.194

Length

277 amino acids

Sequence
(BLAST)

001: MGPGLYSDIG KKARDLLSKD FHTDQKFILT TYSSNGTVIT ASSTKKNESI FSEIQAQLKQ KNVTVDVKAN SDSLLLTTVT VEELGVPGLK KTMTIPFPHR
101: GFGKFEIQYL HDYAGISASA GMNAKPLVNL SAVFGNKAIA AGADVAYDTA TRDFTKYNAG LSFTNADLIA AVTLNNKGES LTASYYHIVN TEKNTAVGAE
201: VTHNFSTKGS TVTFGTQHAL DPTTTVKARY SSNGMASALI QHEWRPKSFF TLSTEVDIDA SGVKKSPKVG LSLVLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.