Factsheet for TraesCS3A01G247900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	81.87	94.76
TraesCS3D01G247900.1	Wheat	cytosol	90.33	92.86
HORVU3Hr1G067610.2	Barley	mitochondrion	75.23	71.76
EES03523	Sorghum	cytosol	49.85	59.57
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	37.46	59.33
GSMUA_Achr7P00060_001	Banana	cytosol	47.73	57.45
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	47.73	57.45
TraesCS5A01G193700.1	Wheat	golgi, unclear	46.83	56.36
GSMUA_Achr3P20500_001	Banana	cytosol	44.41	53.45
Zm00001d043661_P001	Maize	cytosol	44.71	53.43
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	42.3	50.91
TraesCS4A01G046000.1	Wheat	plastid	33.84	40.43
TraesCS5A01G505700.1	Wheat	nucleus	31.12	37.59
KRH56957	Soybean	cytosol	24.47	33.06
KRH03426	Soybean	cytosol	24.17	32.65
KRH63406	Soybean	cytosol	24.17	32.26
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	25.08	32.17
KRH54504	Soybean	cytosol	23.57	31.45
Solyc03g113210.2.1	Tomato	cytosol	21.45	30.08
PGSC0003DMT400065213	Potato	cytosol	21.45	29.71
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	12.99	26.38
CDY01000	Canola	endoplasmic reticulum, plasma membrane	19.64	18.01
TraesCS7A01G166600.1	Wheat	cytosol	26.89	17.25
CDY39954	Canola	extracellular	10.88	16.98

Protein Annotations

EnsemblPlants:TraesCS3A01G247900.1	EnsemblPlantsGene:TraesCS3A01G247900	Gene3D:2.40.160.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30
PFAM:PF01459	SEG:seg	TIGR:cd07306	MapMan:24.4.1	:	:

Description

No Description!

Coordinates

chr3A:+:466039716..466043514

Molecular Weight (calculated)

35083.4 Da

IEP (calculated)

7.210

GRAVY (calculated)

-0.234

Length

331 amino acids

Sequence
(BLAST)

001: MADPVDAPSK PTPVDVPSKP APVDVPSKPA PVDAPSKAAQ VDGPSMAAQC GAPPKAATGP GLYSEIGKKA RDLLCKDFTT DQNLTLTTYA ANGTAITATS
101: TTTKEAVLGE IQTQFKYNNV KVDVKANSDS QVLITTTSET RYIPGLKRIV TVPLTNHTPA KAELQYFHDY AGISVGFGLH SKPLINVSAL VGNKAFALGA
201: DVAYDSATGD FTKYNFGASF TNDDLYAAVM LNNKGDSLSA SYYQMVSNSQ AAAGGEVSHS LSSHETTTTL GFQYSLDPLT TTKVRYDNHG MVRALIQHEL
301: RPKSLLTISS EFDTKAIEKS SKIGLSLLLK P

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.