Factsheet for PGSC0003DMT400065213

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113210.2.1	Tomato	cytosol	91.21	92.37
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	42.26	39.15
PGSC0003DMT400002261	Potato	mitochondrion	43.51	37.68
KRH56957	Soybean	cytosol	38.49	37.55
KRH03426	Soybean	cytosol	37.66	36.73
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	39.75	34.55
GSMUA_Achr6P04840_001	Banana	cytosol	39.33	34.43
Zm00001d020219_P004	Maize	cytosol	39.33	34.06
PGSC0003DMT400005245	Potato	cytosol	39.33	34.06
GSMUA_Achr7P00060_001	Banana	cytosol	38.91	33.82
PGSC0003DMT400017754	Potato	cytosol	38.91	33.7
KRH63406	Soybean	cytosol	34.73	33.47
GSMUA_Achr7P08830_001	Banana	cytosol	38.49	33.45
TraesCS3D01G213400.1	Wheat	cytosol	38.08	33.09
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	38.08	33.09
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	38.08	33.09
EER96631	Sorghum	cytosol	38.08	32.97
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.66	32.73
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	28.45	32.54
TraesCS5A01G193700.1	Wheat	golgi, unclear	37.24	32.36
TraesCS5B01G189000.1	Wheat	mitochondrion	37.24	32.36
TraesCS5D01G196100.1	Wheat	mitochondrion	37.24	32.36
Zm00001d044318_P001	Maize	cytosol, mitochondrion	37.24	32.36
EES03185	Sorghum	cytosol	37.24	32.36
KRH54504	Soybean	cytosol	33.47	32.26
Os01t0588200-01	Rice	mitochondrion, plasma membrane	36.82	32.0
Os05t0536200-01	Rice	mitochondrion	37.24	31.79
GSMUA_Achr3P20500_001	Banana	cytosol	35.98	31.27
HORVU3Hr1G013220.1	Barley	cytosol	12.97	30.69
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	12.97	30.69
Zm00001d011242_P002	Maize	cytosol	36.82	29.04
Zm00001d038840_P001	Maize	mitochondrion	33.47	28.99
EES18574	Sorghum	cytosol	33.47	28.99
TraesCS1B01G374200.1	Wheat	golgi, unclear	33.89	28.12
PGSC0003DMT400055247	Potato	cytosol	32.22	27.9
EES03523	Sorghum	cytosol	32.22	27.8
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	32.22	27.8
TraesCS1D01G361900.1	Wheat	golgi	33.05	27.43
PGSC0003DMT400023484	Potato	cytosol	30.96	27.01
Zm00001d005649_P001	Maize	cytosol	12.13	26.85
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	30.13	25.17
Zm00001d043661_P001	Maize	cytosol	28.87	24.91
TraesCS3D01G247900.1	Wheat	cytosol	31.38	23.29
HORVU1Hr1G080370.2	Barley	plastid	31.8	23.03
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	15.06	22.09
TraesCS7D01G167200.1	Wheat	mitochondrion	24.69	21.69
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	29.71	21.45
HORVU3Hr1G067610.2	Barley	mitochondrion	28.87	19.88
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.1	16.62
CDY39954	Canola	extracellular	14.64	16.51
TraesCS7A01G166600.1	Wheat	cytosol	28.45	13.18
HORVU7Hr1G034770.11	Barley	plastid	24.69	8.56

Protein Annotations

EntrezGene:102583846	Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	UniProt:M1CDK3	PFAM:PF01459	EnsemblPlantsGene:PGSC0003DMG400025346	PGSC:PGSC0003DMG400025346
EnsemblPlants:PGSC0003DMT400065213	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000296E17A
RefSeq:XP_006367075.1	:	:	:	:	:

Description

Voltage-dependent anion channel [Source:PGSC_GENE;Acc:PGSC0003DMG400025346]

Coordinates

chr3:+:53060568..53062079

Molecular Weight (calculated)

25523.6 Da

IEP (calculated)

6.499

GRAVY (calculated)

0.159

Length

239 amino acids

Sequence
(BLAST)

001: MNKQPGIYSD IGKNTTDLLY GDYIRQSPIH NRASLLDCGL YFKCQVNDIV PGLSTLVKLS VPDQRSNKVE VQYMNNYFGV ATGISLEKSP LLSLSGVTGI
101: GFFSIGTEIS FDTATKTLAE CSGGLSFDTD ILSASLTLSD NADTLRAHCY RPILPLTSTG VAAELTHRFV SNQTTLALGA QHCLFPFMLI KARVTSDGSL
201: GALVQNNIFS ALSLSIGAEL NAMDAANTAK LGLTLAFKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.