Factsheet for GSMUA_Achr6P04840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08830_001	Banana	cytosol	84.98	84.36
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	77.29	76.73
GSMUA_Achr7P00060_001	Banana	cytosol	76.56	76.0
GSMUA_Achr3P20500_001	Banana	cytosol	71.43	70.91
GSMUA_AchrUn_...	Banana	cytosol	48.72	48.36
GSMUA_Achr5P08710_001	Banana	cytosol	47.25	46.91
GSMUA_Achr7P26190_001	Banana	cytosol	46.15	45.82
KRH56957	Soybean	cytosol	39.56	44.08
KRH03426	Soybean	cytosol	38.46	42.86
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	38.1	40.31
Solyc03g113210.2.1	Tomato	cytosol	34.43	39.83
PGSC0003DMT400065213	Potato	cytosol	34.43	39.33
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	42.49	38.8
KRH63406	Soybean	cytosol	32.23	35.48
KRH54504	Soybean	cytosol	31.5	34.68
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.95	30.06
CDY39954	Canola	extracellular	16.85	21.7
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.64	19.39

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSMUA_Achr6G04840_001
EnsemblPlants:GSMUA_Achr6P04840_001	EnsemblPlants:GSMUA_Achr6T04840_001	InterPro:IPR023614	UniProt:M0T482	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000296AB28

Description

Mitochondrial outer membrane protein porin [Source:GMGC_GENE;Acc:GSMUA_Achr6G04840_001]

Coordinates

chr6:-:3284264..3288724

Molecular Weight (calculated)

29206.5 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.110

Length

273 amino acids

Sequence
(BLAST)

001: MGPGLYSDVA KRARDLLYKD YQTDQKFTIT TSTLNGVSIT TSGTKKNELI FGELQSQWKN NNISVDVKAT SDSKFATTVT VDELTPGLRS IFSVIIPDQR
101: SGKVELQYLH NYAGVTAGIG LTANPVVNLS GVVGTNTYAV GADVSFDTAT GNFIKCNGGL NVINADLIAS LTVNDKGDSV TASYYHLVSP LSTAVGAELT
201: HCFSSNENTM TFGTQHTLDP LTNVKARFNN CGKASALIQH EWRPKSFVTI SGEVDTKAIE KSAKVGLALV LRP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.