Factsheet for GSMUA_Achr7P08830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04840_001	Banana	cytosol	84.36	84.98
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	77.09	77.09
GSMUA_Achr7P00060_001	Banana	cytosol	75.64	75.64
GSMUA_Achr3P20500_001	Banana	cytosol	72.36	72.36
GSMUA_AchrUn_...	Banana	cytosol	47.27	47.27
GSMUA_Achr7P26190_001	Banana	cytosol	46.18	46.18
GSMUA_Achr5P08710_001	Banana	cytosol	45.82	45.82
KRH56957	Soybean	cytosol	38.55	43.27
KRH03426	Soybean	cytosol	37.45	42.04
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	39.27	41.86
Solyc03g113210.2.1	Tomato	cytosol	33.82	39.41
PGSC0003DMT400065213	Potato	cytosol	33.45	38.49
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	41.09	37.79
KRH63406	Soybean	cytosol	33.45	37.1
KRH54504	Soybean	cytosol	33.09	36.69
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	18.55	31.29
CDY39954	Canola	extracellular	17.09	22.17
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.55	20.22

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSMUA_Achr7G08830_001
EnsemblPlants:GSMUA_Achr7P08830_001	EnsemblPlants:GSMUA_Achr7T08830_001	InterPro:IPR023614	UniProt:M0TFX1	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000296E97F

Description

Mitochondrial outer membrane protein porin [Source:GMGC_GENE;Acc:GSMUA_Achr7G08830_001]

Coordinates

chr7:+:7193806..7198647

Molecular Weight (calculated)

29452.0 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.027

Length

275 amino acids

Sequence
(BLAST)

001: MGPGLYSDIG KKARDLLYKD YQTDQKVTLT TYTLNGIAIS ASGTKKNELI FGELQSQLKN KNISFDVKAT SDSKLLTTVT VDELATPGLR SIFNFIIPDQ
101: QLGKVELQYL HDYVGVTAAV GLTANPIVNL SGVVGTNVYS VGADVSFDTA TGNFIKCNGG LSVINADLIA SLTVNDKGDS INASYYHLVS PLSSTAVGAE
201: LTHNFSTNEN SLTFGTQHAL DPLTIVKARL NNYGKASALI QHEWRPKSFF TISGEIDSKA IEKGAKVGLA LVLRP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.