Factsheet for GSMUA_Achr7P23900_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00060_001	Banana	cytosol	92.36	92.36
GSMUA_Achr3P20500_001	Banana	cytosol	87.27	87.27
GSMUA_Achr6P04840_001	Banana	cytosol	76.73	77.29
GSMUA_Achr7P08830_001	Banana	cytosol	77.09	77.09
TraesCS5B01G189000.1	Wheat	mitochondrion	76.0	76.0
TraesCS5D01G196100.1	Wheat	mitochondrion	76.0	76.0
Zm00001d005649_P001	Maize	cytosol	29.82	75.93
TraesCS5A01G193700.1	Wheat	golgi, unclear	75.64	75.64
EER96631	Sorghum	cytosol	75.27	75.0
Os01t0588200-01	Rice	mitochondrion, plasma membrane	73.45	73.45
TraesCS3D01G213400.1	Wheat	cytosol	72.73	72.73
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	72.73	72.73
Zm00001d020219_P004	Maize	cytosol	72.73	72.46
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	72.0	72.0
EES03185	Sorghum	cytosol	71.64	71.64
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	71.64	71.64
Zm00001d038840_P001	Maize	mitochondrion	70.55	70.29
EES18574	Sorghum	cytosol	69.82	69.57
Zm00001d044318_P001	Maize	cytosol, mitochondrion	68.73	68.73
Os05t0536200-01	Rice	mitochondrion	69.45	68.21
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	50.55	66.51
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	23.64	64.36
EES03523	Sorghum	cytosol	64.36	63.9
Zm00001d011242_P002	Maize	cytosol	70.18	63.7
HORVU3Hr1G013220.1	Barley	cytosol	23.27	63.37
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	62.55	62.09
TraesCS1D01G361900.1	Wheat	golgi	63.64	60.76
TraesCS1B01G374200.1	Wheat	golgi, unclear	62.91	60.07
Zm00001d043661_P001	Maize	cytosol	57.82	57.4
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	58.55	56.29
HORVU1Hr1G080370.2	Barley	plastid	62.55	52.12
TraesCS3D01G247900.1	Wheat	cytosol	58.55	50.0
GSMUA_AchrUn_...	Banana	cytosol	49.82	49.82
GSMUA_Achr7P26190_001	Banana	cytosol	49.45	49.45
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	57.45	47.73
GSMUA_Achr5P08710_001	Banana	cytosol	47.64	47.64
HORVU3Hr1G067610.2	Barley	mitochondrion	58.18	46.11
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	42.55	45.35
KRH56957	Soybean	cytosol	39.27	44.08
KRH03426	Soybean	cytosol	38.55	43.27
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	45.45	41.81
Solyc03g113210.2.1	Tomato	cytosol	34.55	40.25
PGSC0003DMT400065213	Potato	cytosol	34.55	39.75
KRH63406	Soybean	cytosol	34.18	37.9
KRH54504	Soybean	cytosol	33.45	37.1
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.09	28.83
CDY39954	Canola	extracellular	18.55	24.06
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.82	19.67

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSMUA_Achr7G23900_001
EnsemblPlants:GSMUA_Achr7P23900_001	EnsemblPlants:GSMUA_Achr7T23900_001	InterPro:IPR023614	UniProt:M0TK76	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF33	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0002953235
SEG:seg	:	:	:	:	:

Description

Mitochondrial outer membrane protein porin [Source:GMGC_GENE;Acc:GSMUA_Achr7G23900_001]

Coordinates

chr7:+:25963551..25969769

Molecular Weight (calculated)

29463.6 Da

IEP (calculated)

7.745

GRAVY (calculated)

-0.185

Length

275 amino acids

Sequence
(BLAST)

001: MGPGLYSEIG KKARDLLYRD YQTDHKFTVT TCTSNGVAIT ATGTRKNDLI FGEIQSQIKN KNVTFDVKTN SDSNVTTTVT VDELATPGLK TIFSFVIPDQ
101: RSGKVELQYL HDYAGVNASI GLTANPVVNL SGVVGSKNVS VGADVAFDTA TGNFIKYNAG LSITNTDLIA SLTLNNKGDS LSASYYHLVN PLSSTAVGAE
201: LNHSFSSNEN TLTFGTQHAL DPLTTAKARF NNYGKASALI QHEWKPKSFL TISGEVDTKA IENSSKIGLS LVLRP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.