Factsheet for Zm00001d020219_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96631	Sorghum	cytosol	90.94	90.94
Zm00001d005649_P001	Maize	cytosol	35.51	90.74
TraesCS5D01G196100.1	Wheat	mitochondrion	78.62	78.91
TraesCS5B01G189000.1	Wheat	mitochondrion	78.26	78.55
TraesCS5A01G193700.1	Wheat	golgi, unclear	77.9	78.18
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	72.46	72.73
GSMUA_Achr7P00060_001	Banana	cytosol	70.65	70.91
GSMUA_Achr3P20500_001	Banana	cytosol	68.12	68.36
Zm00001d038840_P001	Maize	mitochondrion	67.39	67.39
Zm00001d044318_P001	Maize	cytosol, mitochondrion	63.41	63.64
Zm00001d011242_P002	Maize	cytosol	65.58	59.74
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	57.61	57.4
Zm00001d043661_P001	Maize	cytosol	53.99	53.79
Zm00001d048149_P002	Maize	mitochondrion	47.1	47.27
Zm00001d028102_P001	Maize	mitochondrion	46.01	46.18
Zm00001d027580_P001	Maize	mitochondrion	46.01	44.88
Zm00001d027578_P001	Maize	peroxisome	38.04	41.18
KRH56957	Soybean	cytosol	35.14	39.59
PGSC0003DMT400065213	Potato	cytosol	34.06	39.33
KRH03426	Soybean	cytosol	34.78	39.18
Solyc03g113210.2.1	Tomato	cytosol	32.61	38.14
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	35.14	37.6
KRH63406	Soybean	cytosol	32.61	36.29
KRH54504	Soybean	cytosol	31.52	35.08
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	44.93	33.42
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.75	30.06
CDY39954	Canola	extracellular	15.22	19.81
CDY01000	Canola	endoplasmic reticulum, plasma membrane	24.28	18.56

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:541795	UniProt:A0A1D6I2X6	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085
GO:GO:0098656	InterPro:IPR023614	ProteinID:ONM54514.1	ProteinID:ONM54515.1	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF30	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI00022143CF
EnsemblPlantsGene:Zm00001d020219	EnsemblPlants:Zm00001d020219_P004	EnsemblPlants:Zm00001d020219_T004	:	:	:

Description

voltage-dependent anion channel protein1b voltage-dependent anion channel protein1b

Coordinates

chr7:+:100656090..100660194

Molecular Weight (calculated)

29664.1 Da

IEP (calculated)

8.686

GRAVY (calculated)

-0.182

Length

276 amino acids

Sequence
(BLAST)

001: MVGPGLYTEI GKKTRDLLYK DYQTDHKFTL TTYSSNGVAV TATSTKKADL IFSEIHSQIK NKNMTVDVKA NSESNIITTV TVNEIATPGL KTILSFAVPD
101: QRSGKVELQY LHDYAGVNAS VSLTANPVAN LSAAFGTKAL AVGAEISFDS ATGNFTKYNA GLMFTHEDLI ASLNMNNKGD NLTGAYYHKV SELTNTAVGA
201: ELTHSFSTNE NTLTFGGQHT LDPLTVLKAR INNSGKASVL IQHEWRPKSL VTISAEVDTK TIEKSSKVGI AVALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.