Factsheet for Zm00001d011135_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038840_P001	Maize	mitochondrion	80.87	81.16
EES18574	Sorghum	cytosol	80.14	80.43
Os05t0536200-01	Rice	mitochondrion	69.68	68.93
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	24.19	66.34
HORVU3Hr1G013220.1	Barley	cytosol	23.83	65.35
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	62.09	62.55
GSMUA_Achr7P00060_001	Banana	cytosol	61.73	62.18
TraesCS1D01G361900.1	Wheat	golgi	62.09	59.72
TraesCS1B01G374200.1	Wheat	golgi, unclear	61.01	58.68
GSMUA_Achr3P20500_001	Banana	cytosol	57.4	57.82
Zm00001d020219_P004	Maize	cytosol	57.4	57.61
Zm00001d044318_P001	Maize	cytosol, mitochondrion	54.87	55.27
HORVU1Hr1G080370.2	Barley	plastid	59.93	50.3
Zm00001d011242_P002	Maize	cytosol	54.87	50.16
Zm00001d043661_P001	Maize	cytosol	48.38	48.38
Zm00001d005649_P001	Maize	cytosol	17.33	44.44
Zm00001d048149_P002	Maize	mitochondrion	41.16	41.45
Zm00001d028102_P001	Maize	mitochondrion	40.79	41.09
Zm00001d027580_P001	Maize	mitochondrion	39.35	38.52
KRH56957	Soybean	cytosol	32.85	37.14
KRH03426	Soybean	cytosol	32.13	36.33
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	33.57	36.05
KRH63406	Soybean	cytosol	31.41	35.08
Zm00001d027578_P001	Maize	peroxisome	32.13	34.9
KRH54504	Soybean	cytosol	30.69	34.27
Solyc03g113210.2.1	Tomato	cytosol	28.16	33.05
PGSC0003DMT400065213	Potato	cytosol	27.8	32.22
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.33	29.45
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	37.55	28.03
CDY39954	Canola	extracellular	15.52	20.28
CDY01000	Canola	endoplasmic reticulum, plasma membrane	24.55	18.84

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	UniProt:A0A1D6FWS5	ProteinID:AQK95821.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF34
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0008444297	EnsemblPlantsGene:Zm00001d011135	EnsemblPlants:Zm00001d011135_P001	EnsemblPlants:Zm00001d011135_T001

Description

Mitochondrial outer membrane protein porin 3

Coordinates

chr8:-:140019374..140028075

Molecular Weight (calculated)

29373.2 Da

IEP (calculated)

10.117

GRAVY (calculated)

-0.096

Length

277 amino acids

Sequence
(BLAST)

001: MAAAGPGLYS DIGKKARGLL YKDYHTDRKF TLTTYAANGA FKARVTMDMK HRVVRAMIAG SMGDGDGAPV HVQDKTESVT TTITVHELAT PGLKAFLCIP
101: FPYKKSAKAE LQYLHHHAGV AASVGLNANP VVKLSGVFGT KTVAVGADVA FDTSSGNLTK YNAGLSYSTS DFVAAATLNN KGDKIAASYY HSVSPTTAVG
201: GELSHSFSTN GNTITFGTQH ALDRLTTVKA RFNNCGMASA LIQHKWRPKS LVTISMEVDT KAIEKSSKIG LSLVLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.